View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17279_low_1 (Length: 721)
Name: NF17279_low_1
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 270 - 706
Target Start/End: Complemental strand, 21380137 - 21379691
Alignment:
| Q |
270 |
aaagattggtgtgttcattggcctaatataattcaaagagttttactatgcgatctctcatatcatttcgcccattttgttatcaatagatgaggataat |
369 |
Q |
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| T |
21380137 |
aaagattggtgtgttcagtggcctaatataattcaaagagttttactatgcgatctctcatatcatttcccctattttgttatcaatagatgaggataat |
21380038 |
T |
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| Q |
370 |
tggggcccacacccttggcgcatgttgaaatgttcggttgatagttgtatactctaaacataaagtcattgtatatgaccgatatatacttcacaaatac |
469 |
Q |
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| T |
21380037 |
tggggcccacacccttggcgcatgttgaaatgttgggttgatagttgtatattctaaacataaagtcattgtatctgaccg----atacttcacagatac |
21379942 |
T |
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| Q |
470 |
ttttagatacatatccgtaaagtattggaatta---nnnnnnnnnnnnnaaaaagtattttatcgaa-----------tatttgacggatacgcagatta |
555 |
Q |
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| T |
21379941 |
ttttagatacatatctataaagtattggaattattttttttttatttttaaaaagtattttattgaatacttatagaatatttgacggatacgtagatac |
21379842 |
T |
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| Q |
556 |
tattaagatatttcacatttctgtatcacgtacacgtgctacatagttcaatagtaattgtttgattcacagcattattcataacataatcaaatttaaa |
655 |
Q |
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| T |
21379841 |
taataagatagttcacatttatgtatcaagtacacgtgctacatagttaaatagtaattgtttgattcacaacattattcataacataatcaaatttaaa |
21379742 |
T |
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| Q |
656 |
cccataaggaagacacctaaatagagtatgtcacgttacacaatatcatat |
706 |
Q |
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| T |
21379741 |
cccataaggaagacacctaaatagagtatgtcacgttacacaatatcatat |
21379691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 21380984 - 21380885
Alignment:
| Q |
173 |
tcaggtggtattttatctttattggatacatcagaggtggaggtgtggcatactagaagtttggagaatgctctgattattaatggtcggtttgttaaaa |
272 |
Q |
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| T |
21380984 |
tcaggtggtattttatctttattggatacatcagaggtggaggtgtggcatactagaagtttggagaatgctctgattattaatggtcggtttgttaaaa |
21380885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 48636514 - 48636581
Alignment:
| Q |
343 |
attttgttatcaatagatgaggataattggggcccacacccttggcgcatgttgaaatgttcggttga |
410 |
Q |
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| T |
48636514 |
attttgctatctatggatgaagataattggggccctcgcccttggcgcatgttgaagtgttgggttga |
48636581 |
T |
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