View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17279_low_11 (Length: 329)
Name: NF17279_low_11
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 10465150 - 10465456
Alignment:
| Q |
8 |
ccaagaatatttaagacttgggggccacaaaagggaaattcctgctgtagtgacccgtatgtatagacagaaagaacaacacctagagattccattttca |
107 |
Q |
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| T |
10465150 |
ccaataatatttaagacttgggggccacaaaagggaaattcctgctgtagtgacccgtatgtatagacagaaagaaccacacctagagattccattttca |
10465249 |
T |
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| Q |
108 |
ccatgttggtggcaagttctcaaattaatgaatgagcttaaaaaatatcagcgtgagaagcacgaggtgtccacatatccgggaccaataaatgcatccc |
207 |
Q |
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| T |
10465250 |
ccatgttggtggcaagttctcaaattaatgaatgagcttaaaaaatatcagcgtgagaagcacgaggtgtccacatatccgggaccaataaatgcatccc |
10465349 |
T |
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| Q |
208 |
acatcatacaatattctacggctagcttgcttgattacacggggctccttagagtaaataaaggagaagaatatgtattgagaaaacgtactggtaaggg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10465350 |
acatcatacaatattctacggctagcttgcttgattacacggggctccttagagtaaataaaggagaagaatatgtattgagaaaacgtactggtaaggg |
10465449 |
T |
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| Q |
308 |
tggattg |
314 |
Q |
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| T |
10465450 |
tggattg |
10465456 |
T |
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