View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17279_low_12 (Length: 260)
Name: NF17279_low_12
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_12 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 126064 - 125835
Alignment:
| Q |
13 |
aatataagaagagaatacctgcttccttcaggcatgacatctggcttcctgtatgtgtgacaattggctgcggctttgtttgacaagtggacagctccat |
112 |
Q |
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| T |
126064 |
aatataagaagagaatacctgcttcctccaggcatgacatttggtttcctatatgtgtgacaattggctgcggctttgtttgacaagtggacagctccat |
125965 |
T |
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| Q |
113 |
taagtgacacgtgagcatttgagttaaagagagggttccaaaggagaaaaggcttcaacttccgtaagggagggaaagcagggaaatccaacaaaagatt |
212 |
Q |
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| T |
125964 |
taagtgacacgtgagcatttgagttaaagagagggttccaaaggagaaaaggcttcaacttccgtaagggagggaaagcatggaaatccaacaaaagatt |
125865 |
T |
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| Q |
213 |
ttgaaaaggtgttttgaataaagcatatgt |
242 |
Q |
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| T |
125864 |
ttgaaaaggtgttttgaataaagcatatgt |
125835 |
T |
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