View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17279_low_18 (Length: 210)
Name: NF17279_low_18
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 46341155 - 46340946
Alignment:
| Q |
7 |
ctttcaatggataacaagttttgtgccatgctaccgtaaatagtttccttgtgttaacatcaccactccagataaagttcctcatccacttttccaaatt |
106 |
Q |
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| T |
46341155 |
ctttcaatggataacaagttttgtgccatgctaccgtaactagtttccttgtgttaacatcaccactccagataaagttcctcatccacttttccaaatc |
46341056 |
T |
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| Q |
107 |
tttaattagagttgttggccaagagtagattgaaat-------agaagcagactttggattacacttctaattaattgcactcttccagcaatagatagg |
199 |
Q |
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| T |
46341055 |
tttaattagagttgttggccaagagtatattgaaatacagtgaagaagcagactttggattacacttctaattaattgcactcttcgagcaaaagataag |
46340956 |
T |
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| Q |
200 |
atagaagctt |
209 |
Q |
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| T |
46340955 |
agagaagctt |
46340946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 13320441 - 13320480
Alignment:
| Q |
63 |
acatcaccactccagataaagttcctcatccacttttcca |
102 |
Q |
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| T |
13320441 |
acatcaccactccagataaaattcctaatccacttttcca |
13320480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 30882122 - 30882176
Alignment:
| Q |
48 |
agtttccttgtgttaacatcaccactccagataaagttcctcatccacttttcca |
102 |
Q |
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| T |
30882122 |
agtttccttttgttgacatcaccactccagatgaaattcctcatccacttttcca |
30882176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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