View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17279_low_3 (Length: 500)

Name: NF17279_low_3
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17279_low_3
NF17279_low_3
[»] chr3 (5 HSPs)
chr3 (166-417)||(32249243-32249497)
chr3 (107-339)||(32192792-32193023)
chr3 (416-485)||(32193313-32193382)
chr3 (416-485)||(32248954-32249023)
chr3 (416-485)||(38209214-38209283)
[»] chr7 (4 HSPs)
chr7 (166-415)||(8843785-8844037)
chr7 (119-417)||(8807895-8808191)
chr7 (166-388)||(8823832-8824058)
chr7 (416-477)||(8843502-8843563)
[»] chr1 (2 HSPs)
chr1 (166-417)||(36375967-36376221)
chr1 (416-477)||(36376441-36376502)
[»] chr4 (1 HSPs)
chr4 (42-83)||(32479280-32479321)
[»] chr8 (1 HSPs)
chr8 (42-82)||(4061905-4061945)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 417
Target Start/End: Complemental strand, 32249497 - 32249243
Alignment:
Q  166 aatttgatttgagaaaa-gttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 263  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||  |||| || ||||||||||||||||||||||||||||  |||||||||||    
T  32249497 aatttgatttgagaaaaagttccaaagtaagatttgttttgagcctaatctcacgagtagtgaaaaatgaaaaggttcttatcttttgtcacaaccttgc 32249398  T
Q  264 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaa-ctgcgaactagatttgtttgaaaga 362  Q
    ||||||||| || ||| ||||||||||||| || |||||||| |||||||||||| |||||||| || |||||| | | || ||||| ||||||||||||    
T  32249397 acctgtgagattcttaatagagttatttgagaaatattttcagtggcaaaatggtaaagagattatggtactaaccggtgagctagacttgtttgaaaga 32249298  T
Q  363 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 417  Q
    ||| |||||||||||||||||||||| ||  ||||| |||| |||||||||||||    
T  32249297 gggaaagtgatagataaatttgaagatcaaagcagcggttcaaagatacttcttg 32249243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 339
Target Start/End: Original strand, 32192792 - 32193023
Alignment:
Q  107 catgtgcagcttagtttttcgccaaaaaagaattgaagagactggaaggatgcaaatttaatttgatttgagaaaagttccaaagtaagatttgttctga 206  Q
    ||||||||||  |||||||| ||||| || ||||||||||||| |||||| | |||||| | ||||     |||| |||| ||| |||| |||||| |||    
T  32192792 catgtgcagcgaagtttttctccaaagaaaaattgaagagactagaaggaagaaaattttacttgag----gaaaggttctaaaataagttttgtt-tga 32192886  T
Q  207 ggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgcacctgtgaggtttttattaga---gttatttgaaaagtattt 302  Q
    | |||||  |||||||   ||||||||||||| |||||| |||||  | ||||||||||||||||||||||||  ||||   |||||||| |||||| ||    
T  32192887 gcctaatctcacgtgtaacgaaaaatgaaaagattcttagcttttgtctcaaccttgcacctgtgaggtttttgatagatcagttatttgcaaagtactt 32192986  T
Q  303 tcattggcaaaatggtgaagagattctgttactaact 339  Q
    ||| |||| ||| ||| |||||||| |||||||||||    
T  32192987 tcagtggcgaaagggtaaagagattttgttactaact 32193023  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 485
Target Start/End: Original strand, 32193313 - 32193382
Alignment:
Q  416 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatact 485  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||| |||||||    
T  32193313 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagctgagaagattgaagattatatact 32193382  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 32249023 - 32248954
Alignment:
Q  416 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatact 485  Q
    |||||||||||||||||||||  || |||||||||||||||||||| ||||||||| ||||| |||||||    
T  32249023 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagcagagaagattgaagatgatatact 32248954  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 485
Target Start/End: Original strand, 38209214 - 38209283
Alignment:
Q  416 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatact 485  Q
    |||||||||||| |||| ||| | | ||||||||||||| | |||||||||||| | ||||| |||||||    
T  38209214 tgatttttagtgcggaggttgttaaggatccttctaaatagaaagctgagaagaatgaagatgatatact 38209283  T

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Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 166 - 415
Target Start/End: Complemental strand, 8844037 - 8843785
Alignment:
Q  166 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 263  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||  ||| |||||||    
T  8844037 aatttgatttaagaaaaggttccaaaataagatttgttctgagcctaatctcacgtgtagtgaaaaatgaaaaggttcttatcttttgtcactaccttgc 8843938  T
Q  264 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 362  Q
    ||||||||| |||||  ||||||| ||||| || || ||||| |||||||||||  ||||| ||||| |||| ||| | || ||||||||||||||||||    
T  8843937 acctgtgagatttttcatagagttgtttgagaaatactttcaatggcaaaatggaaaagaggttctgatacttactggtgatctagatttgtttgaaaga 8843838  T
Q  363 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttct 415  Q
    ||  ||||||| ||||| |||||||| | | ||||| ||||||||||||||||    
T  8843837 ggaaaagtgattgataagtttgaagatcctcgcagcggttcgaagatacttct 8843785  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 417
Target Start/End: Complemental strand, 8808191 - 8807895
Alignment:
Q  119 agtttttcgccaaaaaagaattgaagagactggaaggatgcaaatttaatttgatttgagaaaagttccaaagtaagatttgttctgaggctaattgcac 218  Q
    ||||||| |||||| ||||||||||||| || ||| ||  ||||||||||||||   || |||| ||||||| | | ||||| |||||| |||||  |||    
T  8808191 agttttttgccaaagaagaattgaagaggctagaacgaatcaaatttaatttga---ga-aaaatttccaaaattaaatttggtctgagcctaatctcac 8808096  T
Q  219 gtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgcacctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatgg 317  Q
     ||| |||||||||||| |||||||||||||||   || |||||||||||  ||  |||||| ||||||||||||| ||||| ||||| ||  |||||||    
T  8808095 ctgtagtgaaaaatgaagaggttcttatcttttataactaccttgcaccttagaaatttttaatagagttatttgagaagtactttcaatgaaaaaatgg 8807996  T
Q  318 tgaagagattctgttactaactgcgaa-ctagatttgtttgaaagaggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttctt 416  Q
      ||||| ||||  |||||||||  || ||||||||||||||||||||  ||||||| ||||| ||||||||   | ||||  |||| ||||||||||||    
T  8807995 aaaagaggttcttctactaactggtaatctagatttgtttgaaagaggaaaagtgattgataagtttgaagattctcgcagtggttcaaagatacttctt 8807896  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 388
Target Start/End: Original strand, 8823832 - 8824058
Alignment:
Q  166 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 263  Q
    |||||||||| || |||| ||||||| |||||||| || |||| |||||  ||| ||| ||||||||||||||||||||||||||||  ||| || ||||    
T  8823832 aatttgatttaagtaaaggttccaaaataagattttttatgagcctaatctcacatgtagtgaaaaatgaaaaggttcttatcttttgtcactacgttgc 8823931  T
Q  264 acctgtgaggtttttattagagttatttgaaaagtattttc-attggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaag 361  Q
    ||||||||| |||||  ||||||||||||| ||||| |||| || || |||||||  ||||| || || |||||||| | || |||||||||||||||||    
T  8823932 acctgtgagattttttatagagttatttgagaagtactttcaatgggaaaaatggaaaagaggttttgctactaactagtgatctagatttgtttgaaag 8824031  T
Q  362 aggggaagtgatagataaatttgaaga 388  Q
    |||| || | || ||||| ||||||||    
T  8824032 agggaaaataattgataagtttgaaga 8824058  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 8843563 - 8843502
Alignment:
Q  416 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagat 477  Q
    |||||||||||||||||||||  || ||||| |||||||||||||| || |||||| |||||    
T  8843563 tgatttttagtgaggagtttgtggaagatccatctaaatggcaagcagaaaagattgaagat 8843502  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 166 - 417
Target Start/End: Original strand, 36375967 - 36376221
Alignment:
Q  166 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 263  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||  |||||||| ||| ||| ||||||||||| ||||| |  |||||||||||    
T  36375967 aatttgctttgagaaaaggttccaaagtaagatttgttttgagcctaatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaaccttgc 36376066  T
Q  264 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 362  Q
    ||| |||||||||||  ||||||||||||| ||  ||||||  ||| |||||||| |||||||||||  ||||||| | |||| ||| || |||||||||    
T  36376067 accagtgaggtttttgatagagttatttgagaatcattttcggtggaaaaatggtaaagagattctgcaactaactggtgaacaagacttctttgaaaga 36376166  T
Q  363 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 417  Q
      | | |||||||||||||||||||| | |||  ||  ||| |||||||||||||    
T  36376167 acgaacgtgatagataaatttgaagatcgttgtggcgattcaaagatacttcttg 36376221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 36376441 - 36376502
Alignment:
Q  416 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagat 477  Q
    ||||||| ||||||||| ||| ||| |||||||| ||||||||||||||||| ||| |||||    
T  36376441 tgattttcagtgaggagcttgttgaagatccttccaaatggcaagctgagaaaattgaagat 36376502  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 32479280 - 32479321
Alignment:
Q  42 agccgactccacttagtggaaaatggcttggttgctgttgtt 83  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  32479280 agccgaccccacttagtggaaaaaggcttggttgttgttgtt 32479321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 4061905 - 4061945
Alignment:
Q  42 agccgactccacttagtggaaaatggcttggttgctgttgt 82  Q
    ||||||| ||||||||||||||| |||||||||| ||||||    
T  4061905 agccgaccccacttagtggaaaaaggcttggttgttgttgt 4061945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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