View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17279_low_7 (Length: 366)
Name: NF17279_low_7
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 38691025 - 38691373
Alignment:
| Q |
18 |
agaattacccaaatttgcttcaattctttcaaatttaaagttaagtgaaccaattacttgatactccatcattatctatatcttatatgttaatttttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38691025 |
agaattacccaaatttgcttcaattctttcaaatttaaagttaagtgaaccaattacttgatactccatcattatctatatcttatatgttaatttttca |
38691124 |
T |
|
| Q |
118 |
actgcagattctcaactattaatattaccagtattgtttatgtaataaatggagataaaagccaagggaatattctaagtttacaacaacaaatttcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38691125 |
actgcagattctcaactattaatattaccagtattgtttatgtaataaatggagataaaagccaagggaatattacaagtttacaacaacaaatttcttt |
38691224 |
T |
|
| Q |
218 |
tctgtttccttacctttatcttcagtacttttcatagtgattcctcataacaatttcagtgtaaattgcactctttgtactgtttcaatgaataaataaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38691225 |
tctgtttccttacctttatcttcagtacttttcatagtgattcctcataacaatatcagtgtaaattgcactctttgtactgtttcaatgaataaataaa |
38691324 |
T |
|
| Q |
318 |
cagaagagaatttccacaattttgttgctatcaatttttcggttagtat |
366 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38691325 |
cagaagcgaatttccacaattttgttgctatcaatttttcggttagtat |
38691373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University