View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17279_low_9 (Length: 342)
Name: NF17279_low_9
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 35959074 - 35959381
Alignment:
| Q |
19 |
gtattgatccaagtgttatcaaaagctctaactcgagagggtatccactgcacttaaacatgtcgctgtgaagtttctgcagaatctcatgctgtatatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35959074 |
gtattgatccaagtgttatcaaaagctctaactcgagagggtatccactgcacttaaacatgtcgctgtgaagtttctgcagaatctcatgctgtatatc |
35959173 |
T |
|
| Q |
119 |
ggttgtattcattagcagtgtataaatttgtaaacctggtaaaccatcagaacttccagcttcataaacatcgataaaaccatttgtcacatttctcaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35959174 |
ggttgtattcattagcagtgtataaatttgtaaacctggtaaaccatcagaacttccagcttcataaacatcgataaaaccatttgtcacatttctcaac |
35959273 |
T |
|
| Q |
219 |
atgtttaagccttgaattctttcctctccaacattagagtcaattttcctagcgattgtatctaagaagaattttcttgcccgtgactcgatcaaatatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35959274 |
atgtttaagccttgaattctttcctctccaacattagagtcaattttcctagcaattgtatctaagaagaattttcttgcccgtgactcgatcaaatatt |
35959373 |
T |
|
| Q |
319 |
gcgccttt |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
35959374 |
gcgccttt |
35959381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 8844119 - 8844254
Alignment:
| Q |
19 |
gtattgatccaagtgttatcaaaagctctaactcgagagggtatccactgcacttaaacatgtcgctgtgaagtttctgcagaatctcatgctgtatatc |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||| ||| | |||| | ||| | | || |||||||| | ||||||| ||||| ||| |
|
|
| T |
8844119 |
gtatcgatccaagtgttatcaaaagctctacctcaagagggtaaccagtacactcagccattttcttctgcagtttctgtaaaatctcaagctgttcatc |
8844218 |
T |
|
| Q |
119 |
ggttgtattcattagcagtgtataaatttgtaaacc |
154 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8844219 |
gtatgtattcatgagcagtgtatatatttgtaaacc |
8844254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 36375734 - 36375696
Alignment:
| Q |
167 |
agaacttccagcttcataaacatcgataaaaccatttgt |
205 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
36375734 |
agaacttccaccgtcataaacatcgataaaaccatttgt |
36375696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University