View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1727_high_1 (Length: 666)

Name: NF1727_high_1
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1727_high_1
NF1727_high_1
[»] chr2 (3 HSPs)
chr2 (183-649)||(4674141-4674607)
chr2 (47-137)||(4674009-4674099)
chr2 (12-55)||(4673557-4673600)
[»] chr4 (2 HSPs)
chr4 (414-610)||(34547767-34547963)
chr4 (414-610)||(34556260-34556456)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 183 - 649
Target Start/End: Original strand, 4674141 - 4674607
Alignment:
Q  183 caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtaccagtcaaccttcttttcgaattaacaattgtcgtaagata 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  4674141 caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtacaagtcaaccatcttttagaattaacaattgtcgtaagata 4674240  T
Q  283 taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4674241 taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatat 4674340  T
Q  383 caataattaattaaaaatcgtcatcctcatgatccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacac 482  Q
    ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4674341 caagaattaattaaaattcgtcatcctcatgatctataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacac 4674440  T
Q  483 tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgtt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674441 tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgtt 4674540  T
Q  583 cctgccactccatgcaaataagcctccaaattatgccaacttaaaatattccctggactctttaaat 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674541 cctgccactccatgcaaataagcctccaaattatgccaacttaaaatattccctggactctttaaat 4674607  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 4674009 - 4674099
Alignment:
Q  47 taattttaaacccgatnnnnnnntctttaaacctggaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg 137  Q
    ||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674009 taattttaaacccgataaaaaaatctttaaacctagaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg 4674099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 4673557 - 4673600
Alignment:
Q  12 tcatcactacaccatcatcgcagcaacaacaactttaattttaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4673557 tcatcactacaccatcatcgcagcaacaacaactttaattttaa 4673600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 610
Target Start/End: Original strand, 34547767 - 34547963
Alignment:
Q  414 atccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatcc 513  Q
    |||||| | |||||| | ||||||  ||||||||||||| ||||||||||| || ||||||||   | | || |   | ||||||||||||||||||||     
T  34547767 atccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctccaattctcaggaatgtgatattcatcttttaaaccatca 34547866  T
Q  514 aatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca 610  Q
        |||| || |  |||||||| |||||||| ||||| |  |||||| ||| |||||| |||||||||||||| | ||||||||| ||| ||||||    
T  34547867 ttacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctcca 34547963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 610
Target Start/End: Original strand, 34556260 - 34556456
Alignment:
Q  414 atccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatcc 513  Q
    |||||| |||||||| | ||||||  ||||||||||||| ||||||||||| || ||||||||   | | || | | | || |||||||||||||||||     
T  34556260 atccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatca 34556359  T
Q  514 aatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca 610  Q
        |||| || |  |||||||| |||||||| ||||| |  |||||| ||| ||| || |||||||||||||| | ||||||||| ||| ||||||    
T  34556360 ttacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtgttcctgcaattccatgcaagtaaacctcca 34556456  T

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