View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_high_10 (Length: 277)
Name: NF1727_high_10
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_high_10 |
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| [»] scaffold0243 (1 HSPs) |
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| [»] scaffold1890 (1 HSPs) |
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Alignment Details
Target: scaffold0243 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 21614 - 21855
Alignment:
| Q |
20 |
gcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaatt |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||| ||||||||||||||||| |
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| T |
21614 |
gcttctttcatgttgctgtgctcatattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggcttt-gttattgctgcttaatt |
21712 |
T |
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| Q |
120 |
actttcacgtcgctgttccaaatccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctgg |
219 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
21713 |
actttcacgttacggttccaaatccaaattaattgtcgttttatgcttgaagttctgcattgcttcttttgttttccatcggttatgttataattgctgg |
21812 |
T |
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| Q |
220 |
attccaattcattccatgctccatattgatgcaatttcatatt |
262 |
Q |
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||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
21813 |
attcccattcattccatgttccatattgatgcaattccatatt |
21855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 19243730 - 19243489
Alignment:
| Q |
20 |
gcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaatt |
119 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||| ||||||||||||||||| |
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| T |
19243730 |
gcttctttcatattgttgtgcttatattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggcttt-gttattgctgcttaatt |
19243632 |
T |
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| Q |
120 |
actttcacgtcgctgttccaaatccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctgg |
219 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||| |
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| T |
19243631 |
actttcacgttacggttccaaatccaaattaattgtcgttttatgctttatgttctgtattgcttcttttgttttccatcggttttgttataattgctgg |
19243532 |
T |
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| Q |
220 |
attccaattcattccatgctccatattgatgcaatttcatatt |
262 |
Q |
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| T |
19243531 |
attccaattcattccatgttccatattgatgcaattccatatt |
19243489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 39867290 - 39867518
Alignment:
| Q |
20 |
gcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaatt |
119 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||| |
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| T |
39867290 |
gcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgttttcactatggccgaggcttttgttactgctgcttaatt |
39867389 |
T |
|
| Q |
120 |
actttcacgtcgctgttccaaatccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctgg |
219 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
39867390 |
actttcacgttattgttccaaatccaaattaattgtcgttttatgctttaagttctgtattgcttctttggttttccatcggttatgt------------ |
39867477 |
T |
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| Q |
220 |
attccaattcattccatgctccatattgatgcaatttcatatt |
262 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||| |
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| T |
39867478 |
--tccaattcattccatgttccatattgatgcaattccatatt |
39867518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 22704773 - 22705005
Alignment:
| Q |
20 |
gcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcat----attgttttcagtatggccgaagcttttgttattgctgctt |
115 |
Q |
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||||||||||||||| |||||| ||||||||||| |||||||| |||||||| ||| | |||||||| ||||||||| ||||||||||||||||||| |
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| T |
22704773 |
gcttctttcatgttgttgtgctcatattttgctgttatgatttaattcttatgcatgcatactgttttcactatggccgaggcttttgttattgctgctt |
22704872 |
T |
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| Q |
116 |
aattactttcacgtcgctgttccaaatccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattg |
215 |
Q |
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|||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
22704873 |
aattactttcacgtttctgctccgaatacaaattaattgtcgttttatgctttaagttctgtattgcttcttttgttttccatcggttatgt-------- |
22704964 |
T |
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| Q |
216 |
ctggattccaattcattccatgctccatattgatgcaatttcatatt |
262 |
Q |
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| T |
22704965 |
------tccaattcattccatgttccatattgatgcaattccatatt |
22705005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1890 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1890
Description:
Target: scaffold1890; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 214 - 151
Alignment:
| Q |
20 |
gcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcatattgtttt |
83 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
214 |
gcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgtttt |
151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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