View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_high_11 (Length: 267)
Name: NF1727_high_11
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 5061641 - 5061466
Alignment:
| Q |
82 |
aatcacatttaatcccaacgtgagttaactcacattgatt-ctttcatttactttcctgtcataacttgtttattgaaggtttatgggttgtatatgata |
180 |
Q |
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||||||||| |||| |||||| ||||||||||| ||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5061641 |
aatcacattgaatctcaacgtaagttaactcacgttggtttctttcatttactttactatcataacttgtttattgaaggtttatgggttgtatatgata |
5061542 |
T |
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| Q |
181 |
ttatgtgatgcatggtgtatcttttctagtatttactgtatacgtaatttttgtctgtgctaaattttgtattcat |
256 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5061541 |
ttatgtgatgcatggtgtatcttttctagtatgtactgtatacgtaatttttgtctgtgctaacttttgtattcat |
5061466 |
T |
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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 40600527 - 40600419
Alignment:
| Q |
126 |
catttactttcctgtcataacttgtttattgaaggtttatgggttgtatatgatattatgtgatgcatggtgtatcttttctagtatttactgtatacgt |
225 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || || |
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| T |
40600527 |
catttattttcctgtcataacttgtttattgaaggtttatgggttgtatatgatattatgtgatgaatggtgtatcttttctagtatgcactgtttatgt |
40600428 |
T |
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| Q |
226 |
aatttttgt |
234 |
Q |
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||||||||| |
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| T |
40600427 |
aatttttgt |
40600419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 37577149 - 37577107
Alignment:
| Q |
79 |
aaaaatcacatttaatcccaacgtgagttaactcacattgatt |
121 |
Q |
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| T |
37577149 |
aaaaatcacattgaatcccaacgtgagttaactcacattgatt |
37577107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 51719687 - 51719629
Alignment:
| Q |
7 |
cgtgacttaaaccacgctagacataaaactgataaaaaagcaagtaccaaaatagaattt |
66 |
Q |
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| T |
51719687 |
cgtgacttaaaccacgctaggcataaaactggt-acaaagcaagcaccaaaacagaattt |
51719629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 4970784 - 4970594
Alignment:
| Q |
7 |
cgtgacttaaaccacgctagacataaaactgataaaaaagcaagtaccaaaatagaatttgagtagcgcgggaaaaatcacatttaatcccaacgtgagt |
106 |
Q |
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|||||||||||||||||||| ||| |||||| || ||| ||||||| | ||| | ||||| ||| ||| | |||||||||||| ||| || |||||| |
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| T |
4970784 |
cgtgacttaaaccacgctaggcatgaaactggtacaaa-gcaagtatcgaaacaaaatttaagtcacgctgaaaaaatcacattgaattaaaa-gtgagt |
4970687 |
T |
|
| Q |
107 |
taactcacattgatt-ctttcatttactttcctgtcataacttgtttattgaaggtttatgggttgtatatgatattatgtgatgcatggtgtatct |
202 |
Q |
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| T |
4970686 |
taactcacgttggtttctttcatttactttccagtcataacttgtttattgaaggtttatgggttgtata----attttgtgatgcatggtgtatct |
4970594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 4970571 - 4970493
Alignment:
| Q |
178 |
atattatgtgatgcatggtgtatcttttctagtatttactgtatacgtaatttttgtctgtgctaaattttgtattcat |
256 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4970571 |
atattatgtgatgcatggtttatcttttctagtatgtactgtatacgtaatttttgtttgtgctaaattttgtattcat |
4970493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 53814478 - 53814408
Alignment:
| Q |
3 |
gttacgtgacttaaaccacgctagacataaaactgataaaaaagcaagtaccaaaatagaatttgagtagcg |
74 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
53814478 |
gttacgtgacttaaaccacgctagtaccaaaactgatacaaa-gcaagtaccaaaacagaatttgagtagcg |
53814408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 28446444 - 28446378
Alignment:
| Q |
7 |
cgtgacttaaaccacgctagacataaaactgataaaaaagcaagtaccaaaatagaatttgagtagcg |
74 |
Q |
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| T |
28446444 |
cgtgacttaaaccatgctagacataaaactgg-aacaaagcaagtaccaaaacagaatttgagtagcg |
28446378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 2831474 - 2831432
Alignment:
| Q |
79 |
aaaaatcacatttaatcccaacgtgagttaactcacattgatt |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
2831474 |
aaaaatcacattgaatcccaacgtgagttaactcacgttgatt |
2831432 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 17436453 - 17436388
Alignment:
| Q |
8 |
gtgacttaaaccacgctagacataaaactgataaaaaagcaagtaccaaaatagaatttgagtagcg |
74 |
Q |
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||||||||||||| ||||| |||||||||| | | ||||||||||| |||| | ||||||||||||| |
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| T |
17436453 |
gtgacttaaaccatgctaggcataaaactggt-acaaagcaagtacgaaaacaaaatttgagtagcg |
17436388 |
T |
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