View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1727_high_18 (Length: 202)
Name: NF1727_high_18
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 14074595 - 14074461
Alignment:
| Q |
1 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgcttggttgcagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14074595 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgcttggttgcagtc |
14074496 |
T |
|
| Q |
101 |
tctgcaaaacgcatcaaacatggttccgagtttct |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14074495 |
tctgcaaaacgcatcaaacatggttccgagtttct |
14074461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 14150120 - 14149959
Alignment:
| Q |
1 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgcttggttgcagtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
14150120 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgctcgcttgcagtc |
14150021 |
T |
|
| Q |
101 |
tctgcaaaacgcatcaaacatggttccgagtttctttctctagggtttcaagaagaaaatga |
162 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
14150020 |
gctgcaaaacgcatcggacatggttctgagtttctgtctcttaggtttcaagaagaaaatga |
14149959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 13609523 - 13609371
Alignment:
| Q |
1 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgcttggttgcagtc |
100 |
Q |
| |
|
||||||| |||||||| ||| ||||||| ||||||||||| ||||||| ||||| || |||||| ||||||||||||| ||||||||| | |||||||| |
|
|
| T |
13609523 |
tttcatcaatggagtgtgattccaagacgagaccacactccgaacagattgcatcaccagcggagcggtcaaacaccacctccgtcgctcgcttgcagtc |
13609424 |
T |
|
| Q |
101 |
tctgcaaaacgcatcaaacatggttccgagtttctttctctagggtttcaaga |
153 |
Q |
| |
|
|||||||| || || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13609423 |
actgcaaaatgcgtcggacatggttccgagtttctctctctagggtttcaaga |
13609371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 14074442 - 14074414
Alignment:
| Q |
170 |
gctgaaagaacaagagaatgaactatgct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14074442 |
gctgaaagaacaagagaatgaactatgct |
14074414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 14149946 - 14149918
Alignment:
| Q |
170 |
gctgaaagaacaagagaatgaactatgct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14149946 |
gctgaaagaacaagagaatgaactatgct |
14149918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 36014433 - 36014592
Alignment:
| Q |
1 |
tttcatcgatggagtgagatcccaagacaagaccacactctgaacagactgcattgccggcggagtggtcaaacaccacatccgtcgcttggttgcagtc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||| | |||||||| |
|
|
| T |
36014433 |
tttcatcgatggagtgagattccaagacgagaccacactccgaacagactgcatcgccggcggagtggtcgaacaccacctccgtcgctcgcttgcagtc |
36014532 |
T |
|
| Q |
101 |
tctgcaaaacgcatcaaacatggttccgag--tttctttctctagggtttcaagaagaaa |
158 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
36014533 |
gctgcaaaacgcatcggacatggttccgagtttttctctctctagggtttcaagaagaaa |
36014592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University