View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_high_8 (Length: 433)
Name: NF1727_high_8
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 47456909 - 47456502
Alignment:
| Q |
11 |
cacagatcatcagagcttagaagctatataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacaccttgatatttctaaa |
110 |
Q |
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| T |
47456909 |
cacagatcatcagagcttagaagctatataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacaccttgatatttctaaa |
47456810 |
T |
|
| Q |
111 |
cagaaactaattattaatcgtctatatttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgt |
210 |
Q |
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| T |
47456809 |
cagaaactaattattaatcgtctatatttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgt |
47456710 |
T |
|
| Q |
211 |
gcttatatcaacctgtatgaccatcccatatatgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagt |
310 |
Q |
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| T |
47456709 |
gcttatatcaacctgtatgaccatcccatatgtgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagt |
47456610 |
T |
|
| Q |
311 |
tacctttgttccatttggtacaagattctgcagagttctcagtctctcgtttatcttctcccttcttttctgtaagattcnnnnnnncaataagcaccac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47456609 |
tacctttgttccatttggtacaagattctgcagagttctcagtctctcgtttatcttctcccttcttttctgtaagattcaaagagacaataagcaccac |
47456510 |
T |
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| Q |
411 |
atatattg |
418 |
Q |
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| T |
47456509 |
atatattg |
47456502 |
T |
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