View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_1 (Length: 666)
Name: NF1727_low_1
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 183 - 649
Target Start/End: Original strand, 4674141 - 4674607
Alignment:
| Q |
183 |
caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtaccagtcaaccttcttttcgaattaacaattgtcgtaagata |
282 |
Q |
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| T |
4674141 |
caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtacaagtcaaccatcttttagaattaacaattgtcgtaagata |
4674240 |
T |
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| Q |
283 |
taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatct |
382 |
Q |
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| T |
4674241 |
taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatat |
4674340 |
T |
|
| Q |
383 |
caataattaattaaaaatcgtcatcctcatgatccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacac |
482 |
Q |
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| T |
4674341 |
caagaattaattaaaattcgtcatcctcatgatctataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacac |
4674440 |
T |
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| Q |
483 |
tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgtt |
582 |
Q |
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| T |
4674441 |
tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgtt |
4674540 |
T |
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| Q |
583 |
cctgccactccatgcaaataagcctccaaattatgccaacttaaaatattccctggactctttaaat |
649 |
Q |
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| T |
4674541 |
cctgccactccatgcaaataagcctccaaattatgccaacttaaaatattccctggactctttaaat |
4674607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 4674009 - 4674099
Alignment:
| Q |
47 |
taattttaaacccgatnnnnnnntctttaaacctggaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg |
137 |
Q |
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| T |
4674009 |
taattttaaacccgataaaaaaatctttaaacctagaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg |
4674099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 4673557 - 4673600
Alignment:
| Q |
12 |
tcatcactacaccatcatcgcagcaacaacaactttaattttaa |
55 |
Q |
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| T |
4673557 |
tcatcactacaccatcatcgcagcaacaacaactttaattttaa |
4673600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 610
Target Start/End: Original strand, 34547767 - 34547963
Alignment:
| Q |
414 |
atccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatcc |
513 |
Q |
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| T |
34547767 |
atccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctccaattctcaggaatgtgatattcatcttttaaaccatca |
34547866 |
T |
|
| Q |
514 |
aatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
610 |
Q |
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| T |
34547867 |
ttacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctcca |
34547963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 610
Target Start/End: Original strand, 34556260 - 34556456
Alignment:
| Q |
414 |
atccataagcttccatgaaccatctaattgttgaaccatccccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatcc |
513 |
Q |
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| T |
34556260 |
atccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatca |
34556359 |
T |
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| Q |
514 |
aatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
610 |
Q |
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| T |
34556360 |
ttacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtgttcctgcaattccatgcaagtaaacctcca |
34556456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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