View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_16 (Length: 240)
Name: NF1727_low_16
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 5327793 - 5327996
Alignment:
| Q |
22 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5327793 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattt |
5327892 |
T |
|
| Q |
122 |
tcatactacttacacatttctactaatggttcatttttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaac |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5327893 |
tcagactacttacacatttctactaatggttcatttttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaac |
5327992 |
T |
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| Q |
222 |
aaat |
225 |
Q |
| |
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|||| |
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|
| T |
5327993 |
aaat |
5327996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 54773955 - 54774158
Alignment:
| Q |
22 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54773955 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattt |
54774054 |
T |
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| Q |
122 |
tcatactacttacacatttctactaatggttcatttttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaac |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774055 |
tcagactacttacacatttctactaatggttcatttttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaac |
54774154 |
T |
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| Q |
222 |
aaat |
225 |
Q |
| |
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|||| |
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| T |
54774155 |
aaat |
54774158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 26639356 - 26639450
Alignment:
| Q |
22 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaag |
116 |
Q |
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||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| |
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| T |
26639356 |
atgttcatcatcaatgctggttcgggatttaggattttgtggaacactgttaagtccttccttgatcccaagactacctcgaaaatccacgtaag |
26639450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 8071016 - 8071107
Alignment:
| Q |
22 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgt |
113 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||| |||||||||||||| |||||||| |||| |
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| T |
8071016 |
atgttcatcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgt |
8071107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 32616474 - 32616383
Alignment:
| Q |
22 |
atgttcatcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgt |
113 |
Q |
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||||||||||||||||| ||||||||||| || | |||||||||||||| || || ||||| || || ||||||||| ||||||||||||| |
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| T |
32616474 |
atgttcatcatcaatgcaggttctggattcagaatgttgtggaacactgttaaatctttccttgacccaaagaccaccgcaaaaatccatgt |
32616383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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