View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_2 (Length: 581)
Name: NF1727_low_2
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 28280848 - 28281121
Alignment:
| Q |
14 |
ttctaggcgtgcagtggaaatttcacaaagtgacaaaagcaatcaaaggtttttaaggaaatatggtgttggaattcatagccggagaacaatgaaatct |
113 |
Q |
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| T |
28280848 |
ttctaggcgtgctgtggaaatttcacaaagtgacaaaagcaatcaaaggtttctaaggaaatatggtggtggaattcatagccggagaacaatgaaatct |
28280947 |
T |
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| Q |
114 |
ttgagttacatcggtgttgggattgcgtggcacaaactaacaacattatgagatcttaaatcaaacataaaaccgaaacgggacagaaaatgaccactca |
213 |
Q |
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| T |
28280948 |
ttgagttacatcggtgttgggattgcgtggcacaaactaacaacattatgagatcttaaatcaaacataaaaccgaaacaggacagaaaatgaccactca |
28281047 |
T |
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| Q |
214 |
tttatttgagaatcttctccaaaaaatgatagaaatgtcttttttgtttcaat--tatatatgcatatcatagg |
285 |
Q |
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| T |
28281048 |
tttatttgagaatcttctccaaaaaatgatagaaatgacttttttgcttcaattatatatatgcatatcatagg |
28281121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 286 - 550
Target Start/End: Original strand, 28281152 - 28281415
Alignment:
| Q |
286 |
gccatactacaaaaggtaatgatacaaaatagtaagaaataagtcacctgtgtttgtgagcaccacaatttcttttgtcgactatataaaaaagaaagat |
385 |
Q |
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| T |
28281152 |
gccatactacaaaaggtaaggatacaaaatagtaagaaataagtcacctgtgtttgtgagcaccacaatttcttttggcgactatataaaaaagaaagat |
28281251 |
T |
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| Q |
386 |
ttatatgattgagaccatggctttgttttacgattgaagatccatttttattctatgagaaaagcttgaaatttattttggtctctaggaaaaataaaaa |
485 |
Q |
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| T |
28281252 |
ttatatgattgagaccatggctttgttttacgattgaagatccatttttattctatgagaaaaactttaaatttattttggtctctaggaaaaataaaaa |
28281351 |
T |
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| Q |
486 |
taagtttcaggctgtgaagatnnnnnnnnnttgggacatatatacctagcttgaaaatactgtta |
550 |
Q |
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| T |
28281352 |
taagtttcaggctgtgaagat-aaaaaaaattgggacatatatacctagcttgaaaatactgtta |
28281415 |
T |
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