View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_3 (Length: 569)
Name: NF1727_low_3
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 43603173 - 43603510
Alignment:
| Q |
4 |
tcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgaca--gaatcttag |
101 |
Q |
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| T |
43603173 |
tcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgacaaagaatcttag |
43603272 |
T |
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| Q |
102 |
gactaattttttctgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggct |
201 |
Q |
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| T |
43603273 |
gactaattttttctgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggct |
43603372 |
T |
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| Q |
202 |
gctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatcaactaagctat |
301 |
Q |
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| T |
43603373 |
gctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatcaactaagctat |
43603472 |
T |
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| Q |
302 |
agtgtaagtgtaactaacttttacatctaataattgat |
339 |
Q |
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| T |
43603473 |
agtgtaagtgtaactaacttttacatctaataattgat |
43603510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 387 - 569
Target Start/End: Original strand, 43603507 - 43603689
Alignment:
| Q |
387 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
486 |
Q |
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| T |
43603507 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
43603606 |
T |
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| Q |
487 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacata |
569 |
Q |
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| T |
43603607 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacata |
43603689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 411 - 568
Target Start/End: Original strand, 43616565 - 43616722
Alignment:
| Q |
411 |
tggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttacaagggacc |
510 |
Q |
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| T |
43616565 |
tggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggacc |
43616664 |
T |
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| Q |
511 |
tcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacat |
568 |
Q |
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| T |
43616665 |
ccaattacggatcgcgcgtcatcttctatctggatatcatcacaacaatcaagaacat |
43616722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 404 - 568
Target Start/End: Original strand, 43609933 - 43610097
Alignment:
| Q |
404 |
tgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttaca |
503 |
Q |
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| T |
43609933 |
tgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatggccggtgtagcgattctggccttttaca |
43610032 |
T |
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| Q |
504 |
agggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacat |
568 |
Q |
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| T |
43610033 |
agggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacat |
43610097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 43616244 - 43616414
Alignment:
| Q |
119 |
atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg |
218 |
Q |
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| T |
43616244 |
atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg |
43616343 |
T |
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| Q |
219 |
ccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatc |
290 |
Q |
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| T |
43616344 |
tcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaa-ccacattaattttcatc |
43616414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 43609582 - 43609852
Alignment:
| Q |
4 |
tcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaa----tgctattttgaca--gaatc |
97 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| || |||| | ||| || | |||||||| | ||||| |
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| T |
43609582 |
tcaagatttttatgctttcattattggggtagtacattat---tattccttaatctct--gttatttttcaaccaaattttattattttgatatagaatc |
43609676 |
T |
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| Q |
98 |
ttaggactaattttttctgtaatccttcttggttgctttt-cagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgt |
196 |
Q |
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| T |
43609677 |
ttaggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgc |
43609776 |
T |
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| Q |
197 |
tggctgctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaa |
272 |
Q |
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| T |
43609777 |
tgtctggtgcaattgttaattgtcttccggcttcgacattcttctttgctgttctgctcaggtaaatttttgaaaa |
43609852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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