View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1727_low_4 (Length: 537)
Name: NF1727_low_4
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 35 - 523
Target Start/End: Original strand, 35591226 - 35591710
Alignment:
| Q |
35 |
aaattgtcaagcctattctgtgatatctttattttggtaaagcctattttgtgataaggaaacttaagcaaccgatctggcagaattcaagaagtcggta |
134 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
35591226 |
aaattgtcaaacctattctgtgatatctttattttggtaaatcctattttgtgataaggaaacttaagcaaccgatctgtcataattcaagaagttggta |
35591325 |
T |
|
| Q |
135 |
tgaagaatcaattatacagatgtacagatagatgaataaattgagcataaatacaatgataaatccaacctagcaactactgtgcatataaataccaagc |
234 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35591326 |
tgaagaatcaattata---atgtatagatagatgaataaattgagcataaatacaatgataaatccaacctagcaactactgtgcatataaataccaagc |
35591422 |
T |
|
| Q |
235 |
attttagtaaatatatcatcaattaatattttaatcagaaatttcactgcaatttacctaataaggtaatcagnnnnnnnnnnnnnnnnngtgatatatt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35591423 |
attttagtaaatatatcatcaattaatattttaatcagaaatttcactgcaatttacctaataaggtaatcag-aaaaaaaaaaaaaaaagtgatatatt |
35591521 |
T |
|
| Q |
335 |
gaaaaatgtcagtgattgaatttgatattgttatttaacagaactaggtaatagtatattttttcaaccactcttgaagatagcataactgattgaacca |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
35591522 |
gaaaaatgtcagtgattgaatttgatattgttatttaacagaactaggtaatagtatattttttcaaccactctttaagatagcataactgattgaaaca |
35591621 |
T |
|
| Q |
435 |
actaatcaacaggccaaatgaattctatattataatagaaattacctcaacatggagaagatataaatctgaatctagaatcaagtttt |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35591622 |
actaatcaacaggccaaatgaattctatattataatagaaattacctcaacatggagaagatataaatctgaatctagaatcaagtttt |
35591710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 35579209 - 35579380
Alignment:
| Q |
57 |
atatctttattttggtaaagcctattttgtgataaggaaacttaagcaaccgatctggcagaattcaagaagtcggtatgaagaatcaattatacagatg |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| || ||||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
35579209 |
atatctttattttggtaaatcctattttgtgataaggaaacttaagtaaccaatctttcataattcaagaagtccgtatcaagaatcaattacgcagatg |
35579308 |
T |
|
| Q |
157 |
tacagatagatgaataaattgagcataaatacaatgataaatccaacctagcaactactgtgcatataaata |
228 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35579309 |
tacagatagatgaataatttgtgcataaatacaatgataaatccaacctagcaactactgtgcatataaata |
35579380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 35580777 - 35580835
Alignment:
| Q |
465 |
tataatagaaattacctcaacatggagaagatataaatctgaatctagaatcaagtttt |
523 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35580777 |
tataaaagaaattacctcaacatggagaagatataaatctgaatctataatcaagtttt |
35580835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 35566000 - 35566049
Alignment:
| Q |
474 |
aattacctcaacatggagaagatataaatctgaatctagaatcaagtttt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566000 |
aattacctcaacatggagaagatataaatctgaatctagaatcaagtttt |
35566049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 35579415 - 35579477
Alignment:
| Q |
325 |
gtgatatattgaaaaatgtcagtgattgaatttgatattgttatttaacagaactaggtaata |
387 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||| ||| || ||||| ||||| |
|
|
| T |
35579415 |
gtgatatattgaaaaaaggcagtgattgaatttgatattgttatgtaatagtactagctaata |
35579477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University