View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_5 (Length: 512)
Name: NF1727_low_5
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 34725102 - 34724644
Alignment:
| Q |
8 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacnnnnnnnnnnnnn--gaggtaaaatttgaatt |
105 |
Q |
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| T |
34725102 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatttattttttttttgaggtaaaatttgaatt |
34725003 |
T |
|
| Q |
106 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttataagtgtttgtacccgtatataatggatttaa |
205 |
Q |
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| T |
34725002 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttccaagtgtttgtacccgtatataatggatttaa |
34724903 |
T |
|
| Q |
206 |
acatctgtgtaaaatagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatg |
305 |
Q |
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| T |
34724902 |
atatctgtgtaaaatagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatg |
34724803 |
T |
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| Q |
306 |
atatggataaatggtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatctctcgagggagagttatgccac |
405 |
Q |
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| T |
34724802 |
atatggataaatggtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatctcttgagggagagttatgccac |
34724703 |
T |
|
| Q |
406 |
caattatgattctacggacccaacttgagggattagtttttatagtaatgcatagaagatacatagtttacat |
478 |
Q |
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| T |
34724702 |
caattatgattctgc--------------ggattagtttttatagtaatgcatagaagatacatagtttacat |
34724644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 34729063 - 34728912
Alignment:
| Q |
212 |
gtgtaaaatagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattg----taaggatgttttgagattagtagagtatgat |
307 |
Q |
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|||||||||||||||||| | | ||||||||||||||||||||||| | ||||||||||||| ||||||| |||||| |||||||| || | |
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| T |
34729063 |
gtgtaaaatagttttacattgagatccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaattagtag--tacggc |
34728966 |
T |
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| Q |
308 |
atggataaatggtggtttctcatctgatatcagagtacatgctcattgaactct |
361 |
Q |
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|||||||||| ||||||||||| ||| || ||||| | |||||||||||||| |
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| T |
34728965 |
atggataaattttggtttctcattggatgtcggagtataagctcattgaactct |
34728912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 34729217 - 34729157
Alignment:
| Q |
15 |
tctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaac |
75 |
Q |
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||||||||||| |||| ||||||| |||||||||| ||||||||||| ||| ||||||| |
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| T |
34729217 |
tctgatcatactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaac |
34729157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 6453284 - 6453252
Alignment:
| Q |
212 |
gtgtaaaatagttttacactaacatccaatgaa |
244 |
Q |
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| T |
6453284 |
gtgtaaaatagttttacactaacatgcaatgaa |
6453252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 36636342 - 36636378
Alignment:
| Q |
212 |
gtgtaaaatagttttacactaacatccaatgaaaacc |
248 |
Q |
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|||||||||||||||||||| ||||||||||| |||| |
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| T |
36636342 |
gtgtaaaatagttttacactgacatccaatgagaacc |
36636378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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