View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727_low_6 (Length: 491)
Name: NF1727_low_6
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 14185568 - 14185100
Alignment:
| Q |
17 |
attgttaactactgaattctaattaattgttgaactaatttttgaatgctaagtaatattcactctgtgatagataaggtcttctgccttgggtttttat |
116 |
Q |
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| T |
14185568 |
attgttaactactgaattctaattaattgttgaactaatttttgaatgctaattaatattcactctatgatagataaggtcttctgccttggttttttat |
14185469 |
T |
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| Q |
117 |
ttggattttgttatttacaagcattat---aatcttgtttggaggatgccctgaccttttcagctttttagttttaatcttgtctggttagcttatctta |
213 |
Q |
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| T |
14185468 |
ttggattttgtaatttacaagcattattataatcttgtttggaggatgccctgaccttttcagctttgtagttttaatcttgtctggttagcttatctta |
14185369 |
T |
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| Q |
214 |
gtaaatagtagttttttcattgttttttatcttgcaaagtaaactggttgtcgtataattttttctttaaatagtatttacacacatatatgtgatcata |
313 |
Q |
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| T |
14185368 |
gtaaatagtagttttttcattgttttttatcttgcaaagtaaactggttgtcgtataattttttctttaaatagtatttacacacatatatgtgatcata |
14185269 |
T |
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| Q |
314 |
gtgaggggtaaggaggtatgctacacttgaaattgtgtagccttttgtatctatatatgattgggtacctctgtattgcgtgaaggtatgatggtgtcta |
413 |
Q |
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| T |
14185268 |
gtgaggggtaaggaggtatgctacacttgaaattgtgtagccttttgtatctatatatgattgggtacccctatattgcgtgaaggtatgatggtgtcta |
14185169 |
T |
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| Q |
414 |
aagaaaatgtgctggtattagtcaacatgtagtcaaatttatatgggaaatgccaatgagtaccctatg |
482 |
Q |
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| T |
14185168 |
aagaaaatgtgctggtattagtcaacatgtagtcaaatttatatgggaaatgccaatgagtaccctatg |
14185100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 42666845 - 42666911
Alignment:
| Q |
27 |
actgaattctaattaattgttgaactaatttttgaatgctaagtaatattcactctgtgatagataa |
93 |
Q |
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||||||| |||||||||||||||| |||||| |||||||||| || |||| | ||| |||||||||| |
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| T |
42666845 |
actgaatgctaattaattgttgaattaatttctgaatgctaattactattaattctatgatagataa |
42666911 |
T |
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