View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728-Insertion-1 (Length: 928)
Name: NF1728-Insertion-1
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Complemental strand, 44974959 - 44974498
Alignment:
| Q |
7 |
agcgtcgtcaagaaaattaggacagagaataccgacaggaaagtggacaaccttgcaatggcggtctgagggatggagagtgtagatgaaggaggtaccg |
106 |
Q |
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| T |
44974959 |
agcgtcgtcaagaaaattaggacagagaataccgacaggaaagtggacaaccttgcaatggcggtctgagggatggagagtgtagatgaaggaggtaccg |
44974860 |
T |
|
| Q |
107 |
ttggtccattcaaggtcgtaaacgacgacatcattgagttgattttggatgatgttgaagtttcgaccgttcggccagtcgtaccataagtccacttttt |
206 |
Q |
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| T |
44974859 |
ttggtccattcgaggtcgtaaacgacgacatcattgagttgattttggatgatgttgaagtttcgaccgttaggccagtcgtaccataagtccacttttt |
44974760 |
T |
|
| Q |
207 |
gcaggactccgctcttgttcataaacattaaggcatgaaactgctccggccaaacagccggaattggctcagccatcgaatatgaagccnnnnnnnnnnn |
306 |
Q |
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| T |
44974759 |
gcaggactccgctcttgttcatgaacattaaggcatgaaactgctctggccaaacagccggaattggctcagccatcgaatatgaagccgagagagagaa |
44974660 |
T |
|
| Q |
307 |
nnnnttgacatataggaatatcctagatagttgttctattgcagaggccatggctgctctaagtttcatcacaacaaataagagaaatggaaactaaaaa |
406 |
Q |
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| T |
44974659 |
gagattgacatataggaatatcctagatagttgttctatttcagaggccatggctgctctaagtttcatcacaacaaataagagaaatggaaactaaaaa |
44974560 |
T |
|
| Q |
407 |
caagtcattcatggaaattatcagaaaagataagagtttgatgaatgtgaggtggaaactcc |
468 |
Q |
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| T |
44974559 |
caagtcattcatggaaattatcagaaaagataagagtttgatgaatgtgaggtggaaactcc |
44974498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 536 - 923
Target Start/End: Complemental strand, 44974430 - 44974035
Alignment:
| Q |
536 |
aaaatacttaatttcatctgccattttgatttaccaannnnnnnagatttaatctctgggtattttaaattattactatttagtccctctacctatttaa |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974430 |
aaaatacttaatttcatctgccattttgatttaccaatttttttagatttaatctctgggtattttaaattattactatttagtccctctacctatttaa |
44974331 |
T |
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| Q |
636 |
aaacaatatctttgctactaataagcaaattggaagtgattctgcaatcaattcattatgcacaatcgatactttccaaacacccgaacatatattaatt |
735 |
Q |
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| T |
44974330 |
aaacaatatctttgctactaataagcaaattggaagtgattctgcaatcaattcattatgcacaatcgatactttccacacacccgaacatatattaatt |
44974231 |
T |
|
| Q |
736 |
tcc-ggtgctaagaa-----ttgcctcaatactcaaatagtatacacacaagcctgccatttcacgcagtagatggacgtgctcatgaggtattacgaga |
829 |
Q |
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||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974230 |
tccgggtgctaagaattgtcttgcctcaatactc-aatagtatacacacaagcctgccatttcacgcagtagatggacgtgctcatgaggtattacgaga |
44974132 |
T |
|
| Q |
830 |
ttattttcaatcaatcattatattaaacatttt--cccaaataagtcttatttatcgcttgtaagacttttagc-attcggttcattatttcccaaa |
923 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44974131 |
ttattttcaatcaatcattatattaaacattttcaccaaaataagtcttatttatcgcttgtaagacttttagcaattcagttcattatttcccaaa |
44974035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 50 - 269
Target Start/End: Complemental strand, 44973386 - 44973167
Alignment:
| Q |
50 |
tggacaaccttgcaatggcggtctgagggatggagagtgtagatgaaggaggtaccgttggtccattcaaggtcgtaaacgacgacatcattgagttgat |
149 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| | || |||||||||||||||| |
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| T |
44973386 |
tggacaaccttgcagtggcggtcggagggatggagagtgtacatgaaggaggttccattggtccattcaaggtcgtaatctacaacatcattgagttgat |
44973287 |
T |
|
| Q |
150 |
tttggatgatgttgaagtttcgaccgttcggccagtcgtaccataagtccactttttgcaggactccgctcttgttcataaacattaaggcatgaaactg |
249 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| || ||| |||||| ||||||| || | || || ||||||||| |
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| T |
44973286 |
cttggatgatattgaagtttcgaccgttgggccagtcgtaccataagtccaatttctgtagggatccgcttctgttcatgaatagtacggaatgaaactg |
44973187 |
T |
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| Q |
250 |
ctccggccaaacagccggaa |
269 |
Q |
| |
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|||||||||| | ||||||| |
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| T |
44973186 |
ctccggccaagctgccggaa |
44973167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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