View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728-Insertion-2 (Length: 195)
Name: NF1728-Insertion-2
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728-Insertion-2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 33159575 - 33159388
Alignment:
| Q |
8 |
caaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctggctcatttttgtaagaaagcaattt |
107 |
Q |
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| T |
33159575 |
caaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaattt |
33159476 |
T |
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| Q |
108 |
ctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
195 |
Q |
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| T |
33159475 |
ctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
33159388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 33182419 - 33182232
Alignment:
| Q |
8 |
caaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctggctcatttttgtaagaaagcaattt |
107 |
Q |
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| T |
33182419 |
caaatgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaattt |
33182320 |
T |
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| Q |
108 |
ctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
195 |
Q |
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| T |
33182319 |
ctcaacctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
33182232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 33140951 - 33140768
Alignment:
| Q |
12 |
tgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctggctcatttttgtaagaaagcaatttctca |
111 |
Q |
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| T |
33140951 |
tgtcttcaaaactgaagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccacccagtctcattcttgtaagaaagcaatttctca |
33140852 |
T |
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| Q |
112 |
acctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
195 |
Q |
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| T |
33140851 |
acctgttgtgttacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccagaagttgttaaccaca |
33140768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 33287165 - 33287344
Alignment:
| Q |
22 |
actgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctggctcatttttgtaagaaagcaatttctcaacctgttgtg |
121 |
Q |
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| T |
33287165 |
actgtagtaccatggccaacagcaatcacaatagaacctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgtt |
33287264 |
T |
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| Q |
122 |
taacagagtttgtt------ttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccaca |
195 |
Q |
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| T |
33287265 |
ttacactgtctgttgtatcattattattcatcttggtgagaaacaaactctccacctttgtccaaaatttgttaaccaca |
33287344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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