View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728-Insertion-3 (Length: 775)
Name: NF1728-Insertion-3
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 7 - 775
Target Start/End: Original strand, 49015346 - 49016108
Alignment:
| Q |
7 |
aatttagacaaacctcaattgttctgatccaatctttgtacaaaatattgtcaaatagcatttatagtggcaacatggccctattgcatagcagaatttt |
106 |
Q |
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| T |
49015346 |
aatttagacaaacctcaattgttctgatacaatctttgtacaaaatattgtcaaatagcatttatagtggcaacatggccctattgcatagcagaatttt |
49015445 |
T |
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| Q |
107 |
aacattctgctatccgcgattaacaacaaggctaatattggattggtgacaattctaaactgtaatgttttattgtttttgtttgctatcaatgtttact |
206 |
Q |
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| T |
49015446 |
aacattctgctatccgcgattaacaacaaggctaatattggattggtgacaattctaaactgtaatgttttattgtttttgtttgctatcaatgtttact |
49015545 |
T |
|
| Q |
207 |
atgggttaggtggcaggggtgttcagttctgattgtttagagatgctcatttgcctgtgacccacttcactgatgcattgataactaagctgcaaaactt |
306 |
Q |
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| T |
49015546 |
atgggttaggtggcaggggtgttcagttctgattgtttagagatgctcatttgcctgtgacccacttcactgatgcattgataactaagctgcaaaactt |
49015645 |
T |
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| Q |
307 |
gcttactgttaattattgtatacttcaaaaattaaaatcatgttaatatcatagttaatgaacttgtgtctctttgtgaggggaccttgctagtgtgtgg |
406 |
Q |
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| T |
49015646 |
gcttactgttaattattgtatacttcaaaaattaaaatcatgttaatatcatagttaatgaacttgtgtctctttgtgagggaaccttgctagtgtgtgg |
49015745 |
T |
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| Q |
407 |
aattattttatttgagttcaagattgttttcaattccttcgggtgttccttgcccctgaggatcaatgtatttttactcgaagctaatgccaaattgaac |
506 |
Q |
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| T |
49015746 |
aattattttatttgagttcaagattgttttcaattccttcgggtgttccttgcccctgaggatcaatgtatttttactcgaagctaatgccaaattgaac |
49015845 |
T |
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| Q |
507 |
actagattgatttcatactgttgtgggttctatggaaaattgaatgtaatagcttacatattccccatgtgaatatacacttcatggtaaaacttgttaa |
606 |
Q |
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| T |
49015846 |
actagattgatttcatactgttgtgggttctatggaaaattgaatgtaatagcttacatattccccatgtgaatatacacttcat-gtaaaacttgttaa |
49015944 |
T |
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| Q |
607 |
ttcaatgatatggactgtccttttccgaattagcagtctccaactggaagttgaggttttttggaagtgttgttgaatctttctttatcagtgtgcgtga |
706 |
Q |
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| T |
49015945 |
ttcaatgatatggactgtccttttccgaattagcagtctccaactggaagttgaggttttttggaagtgttgttgaa----tctttatcagtgtg-ttga |
49016039 |
T |
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| Q |
707 |
ccataggcaaactggtttagtcatcagtcatgtttaaacaattgttgggaattttcctggaatcggtgc |
775 |
Q |
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| T |
49016040 |
ccataggaaaactggtatagtcatcagtcatgtttaaacaattgttgggaattttcctggaatcggtgc |
49016108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 6522 - 6566
Alignment:
| Q |
90 |
ttgcatagcagaattttaacattctgctatccgcgattaacaaca |
134 |
Q |
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| T |
6522 |
ttgcataggagaattttaacattctgctatccgctattgacaaca |
6566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 8431014 - 8430970
Alignment:
| Q |
90 |
ttgcatagcagaattttaacattctgctatccgcgattaacaaca |
134 |
Q |
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| T |
8431014 |
ttgcataggagaattttaacattctgctatccgctattgacaaca |
8430970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 19263195 - 19263148
Alignment:
| Q |
87 |
ctattgcatagcagaattttaacattctgctatccgcgattaacaaca |
134 |
Q |
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| T |
19263195 |
ctattgcatagcggaattttaacaatctgctatccgcgactgacaaca |
19263148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 4762572 - 4762507
Alignment:
| Q |
44 |
gtacaaaatattgtcaaatagcatttatagtggcaacatggccctattgcatagcagaattttaac |
109 |
Q |
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| T |
4762572 |
gtacaaaatgttgtcaaatagccgttatagtggcaccatagcacaatttcattgcagaattttaac |
4762507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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