View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728-Insertion-5 (Length: 501)
Name: NF1728-Insertion-5
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 4348577 - 4349070
Alignment:
| Q |
8 |
catatgattgtcatggaaggaagatgaagatcaaaggaagatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtgg |
107 |
Q |
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| T |
4348577 |
catatgattgtcatggaaggaagatgaagatcaaaggaagatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtgg |
4348676 |
T |
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| Q |
108 |
caatatccatctatgactaaagttggtggcttggatcctcatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccag |
207 |
Q |
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| T |
4348677 |
caatatccatctatgactaaagttggtggcttggatccccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccag |
4348776 |
T |
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| Q |
208 |
tatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatgtaataatgtgagtacaatcattcattggcaagagcatctaatatag |
307 |
Q |
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| T |
4348777 |
tatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatgtaataatgtgagtacaatcattcattggcaagagcatctaatatag |
4348876 |
T |
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| Q |
308 |
tttcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaagggggttatttct |
407 |
Q |
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| T |
4348877 |
ttgcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaaggggattatttct |
4348976 |
T |
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| Q |
408 |
ttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacacttcgcttttggga |
501 |
Q |
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| T |
4348977 |
ttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgcttttggga |
4349070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 501
Target Start/End: Complemental strand, 25745427 - 25744985
Alignment:
| Q |
46 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
145 |
Q |
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| T |
25745427 |
agatattaagtggtcat---ggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccc |
25745331 |
T |
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| Q |
146 |
tcatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
245 |
Q |
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| T |
25745330 |
tcatacttctagagtcctccatctttctcaggtatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgt |
25745231 |
T |
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| Q |
246 |
gaatttttaaagcatgtaataatgtgagtacaatcattcattggcaagagcatctaatatagtttcttgggattgttttcaacaagtgacatcaacttca |
345 |
Q |
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| T |
25745230 |
gaatttttatagcatgtaagaatgcgagtacagtcattcattggcaagagcatctaatttagctgcttcagattgttttc--------atataaacttca |
25745139 |
T |
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| Q |
346 |
actatgttaaaacatataaacatgaatgaaaccacttaaactttaacaagggggttatttctttcaagttatacactaatgctcttatgtcttgcagagt |
445 |
Q |
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| T |
25745138 |
actttgttaaaacatataaacatgaatcaaaccacttaaactttatcaaggtgattatttcattcaagt--tacactaatgctcttatgtcttgcagagt |
25745041 |
T |
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| Q |
446 |
tcagatggtttaactgtggtttcatctgggggagatgagacacttcgcttttggga |
501 |
Q |
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| T |
25745040 |
ccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttggga |
25744985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 18928659 - 18928523
Alignment:
| Q |
62 |
tcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatat-----------ccatctatgactaaagttggtggcttggatcctcata |
150 |
Q |
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|||| |||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||| ||| |||| |||||| | ||||||| |
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| T |
18928659 |
tcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaatatgccaatatccatcatctatgaccaaacttggaggcttgaaccctcata |
18928560 |
T |
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| Q |
151 |
ct---tctagagtcctccatctttctcaggtatgctt |
184 |
Q |
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| T |
18928559 |
cttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 36841042 - 36840973
Alignment:
| Q |
46 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatc |
118 |
Q |
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| T |
36841042 |
agatattaagtggtcatga---ctttagtacaaatccaaaacattaccaactgtgtttgtggcaatatccatc |
36840973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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