View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728-Insertion-6 (Length: 365)
Name: NF1728-Insertion-6
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 21372620 - 21372977
Alignment:
| Q |
8 |
ctcttctcagttggagcacaagcagcatgtggtgcaacatttggaatcattccattcatatcaagaagatcattgggaattatatccggtttaacaggtg |
107 |
Q |
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| T |
21372620 |
ctcttctcagttggagcacaagcagcatgtggtgcaacatttggaatcattccattcatatcaagaagatcattgggaattatatcaggtttaacaggtg |
21372719 |
T |
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| Q |
108 |
caggtggaaactttggttcaggattaacacagttgatannnnnnncaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgt |
207 |
Q |
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| T |
21372720 |
caggtggaaactttggttctggattaacacagttgatatttttttcaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgt |
21372819 |
T |
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| Q |
208 |
tggttgtacacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttct |
307 |
Q |
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| T |
21372820 |
tggttgtacacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttct |
21372919 |
T |
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| Q |
308 |
gaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctg |
365 |
Q |
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| T |
21372920 |
gaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctg |
21372977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 21384937 - 21384580
Alignment:
| Q |
8 |
ctcttctcagttggagcacaagcagcatgtggtgcaacatttggaatcattccattcatatcaagaagatcattgggaattatatccggtttaacaggtg |
107 |
Q |
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| T |
21384937 |
ctcttctcagttggagcacaagcagcatgtggtgcaacatttggaatcattccattcatatcaagaagatctttgggaattatatcaggtttaacaggtg |
21384838 |
T |
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| Q |
108 |
caggtggaaactttggttcaggattaacacagttgatannnnnnncaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgt |
207 |
Q |
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| T |
21384837 |
caggtggaaactttggttctggattaacacagttgatatttttttcaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgt |
21384738 |
T |
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| Q |
208 |
tggttgtacacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttct |
307 |
Q |
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| T |
21384737 |
tggttgtacacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttct |
21384638 |
T |
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| Q |
308 |
gaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctg |
365 |
Q |
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| T |
21384637 |
gaatggaatgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctg |
21384580 |
T |
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Back To:
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