View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17280_high_2 (Length: 254)
Name: NF17280_high_2
Description: NF17280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17280_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 49917217 - 49917454
Alignment:
| Q |
17 |
aaaataaccctaacaaattaaccattaacattttccaatattnnnnnnnccttaatattttgtgattcatttatcaccatttcaattccaatttccacca |
116 |
Q |
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| T |
49917217 |
aaaataaccctaacaaattaaccattaacattttccaatattaaaaaaaccctaatattttgtgattcatttatcaccatttcaattccaatttccacca |
49917316 |
T |
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| Q |
117 |
tctaaaccctccatgtattgcaaaatcatatcaacattcataatcaagaaaatgcaacatatagaaaattgnnnnnnngaaaagatggggaatgattatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49917317 |
tctaaaccctccatgtattgcaaaatcatatcaacattcataatcaagaaaatgcaacatatagaaaattgaaaaaaagaaaagatggggaatgattatg |
49917416 |
T |
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| Q |
217 |
ttaccgcataagcctcagagatctgtttgaaacgggct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49917417 |
ttaccgcataagcctcagagatctgtttgaaacgggct |
49917454 |
T |
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