View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_high_12 (Length: 238)
Name: NF17281_high_12
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 475324 - 475551
Alignment:
| Q |
1 |
gaattatggggtctgcagttgtattttgtctccaagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattct |
100 |
Q |
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| T |
475324 |
gaattatggggtctgcatttgtattttgtctccaagcatggtgcattacaaagagaggacctctcttctctgcagtgtttagtcctctcttaacaattct |
475423 |
T |
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| Q |
101 |
tgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatttgaaca-ttacaa |
199 |
Q |
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| T |
475424 |
tgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatttgaacatttacaa |
475523 |
T |
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| Q |
200 |
cttaaattattaatctaattaactgatg |
227 |
Q |
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| T |
475524 |
cttaaattattaatctaattaactgatg |
475551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 457659 - 457889
Alignment:
| Q |
1 |
gaattatggggtctgcagttgtattttgtctccaagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattct |
100 |
Q |
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| T |
457659 |
gaattatggggtctgcatttgtattttgtctccaagcatggtgcattacaaagagaggacctctcttctctgcaatgtttaatcctctcttaacagtgat |
457758 |
T |
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| Q |
101 |
tgtgactatattggctgtct----tgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatttgaacatta |
196 |
Q |
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| T |
457759 |
tgtgactatactagctgcctgccttgctgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaatattaatttgaacatta |
457858 |
T |
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| Q |
197 |
caacttaaattattaatctaattaactgatg |
227 |
Q |
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| T |
457859 |
caacttgaattattagtctaactaaatgatg |
457889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 449367 - 449553
Alignment:
| Q |
1 |
gaattatggggtctgcagttgtattttgtctccaagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattct |
100 |
Q |
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|||||||||| || |||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
449367 |
gaattatgggatcagcagttttattttgtctccaagcatggtgcattaaaaagagaggacctctcttctctgcaatgtttagtcctctcaacacaataat |
449466 |
T |
|
| Q |
101 |
tgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatt |
187 |
Q |
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| T |
449467 |
tgtgactgtattggcttccttgtttcttcatgaggagatatacaccggaaggtattaatatttaagttctaacaatgatgattaatt |
449553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 480818 - 480939
Alignment:
| Q |
33 |
caagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattcttgtgactatattggctgtcttgttgcttcatg |
132 |
Q |
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| T |
480818 |
caagcatggtgcatttcaaagagaggacctctcttctctgctatgtttaatcctcttttcacattaattgtgactgtatttgctatcttgttgcttcatg |
480917 |
T |
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| Q |
133 |
aggaaatatacattggaaggta |
154 |
Q |
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| T |
480918 |
aggaaatatacattggaaggta |
480939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 468772 - 468928
Alignment:
| Q |
4 |
ttatggggtctgcagttgtattttgtctccaagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattcttgt |
103 |
Q |
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| T |
468772 |
ttatgggatctgcagtaatatactgtctccaagcatggtgcatttcaaggagaggacctctcttctctgctatgtttactcctgttttcacaattatttg |
468871 |
T |
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| Q |
104 |
gactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaata |
160 |
Q |
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||| ||||||||| | | |||||||||||||||||||||||||||||||| ||||| |
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| T |
468872 |
tactgtattggctgccattttgcttcatgaggaaatatacattggaaggtagtaata |
468928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 27489923 - 27489790
Alignment:
| Q |
27 |
tgtctccaagcatggtgcattgcaaagggaggacctctcttctctgcagtgtttagtcctctcttgacaattcttgtgactatattggctgtcttgttgc |
126 |
Q |
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| T |
27489923 |
tgtctccaagcatggtgcatttcaagaagaggacctctattctctgctatgtttactcctgtttccacattaattgtgactgtattagctgttttgttgc |
27489824 |
T |
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| Q |
127 |
ttcatgaggaaatatacattggaaggtactaata |
160 |
Q |
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| T |
27489823 |
ttcatgaggaagtatacattggaaggtagtaata |
27489790 |
T |
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