View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_high_14 (Length: 227)
Name: NF17281_high_14
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_high_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2149969 - 2149743
Alignment:
| Q |
1 |
attcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatac |
100 |
Q |
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| T |
2149969 |
attcaacttgcagagaatggacaattgccaaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatac |
2149870 |
T |
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| Q |
101 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtg |
200 |
Q |
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| T |
2149869 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtg |
2149770 |
T |
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| Q |
201 |
ctttggttaacctctttgtgcatcttt |
227 |
Q |
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| T |
2149769 |
ctttggttaacctctttgtgcatcttt |
2149743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2140960 - 2140735
Alignment:
| Q |
1 |
attcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatac |
100 |
Q |
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|||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140960 |
attcaactagcagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatac |
2140861 |
T |
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| Q |
101 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtg |
200 |
Q |
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| T |
2140860 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgagtgatgcacgtg |
2140761 |
T |
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| Q |
201 |
ctttggttaacctctttgtgcatcttt |
227 |
Q |
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| T |
2140760 |
ctttggtt-atctctttgtgcctcttt |
2140735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2145494 - 2145271
Alignment:
| Q |
1 |
attcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatac |
100 |
Q |
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|||||||| | ||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
2145494 |
attcaactagtagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttggtgagtacaaacccatggagacattaaggagtatac |
2145395 |
T |
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| Q |
101 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtg |
200 |
Q |
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| T |
2145394 |
ctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtg |
2145295 |
T |
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| Q |
201 |
ctttggttaacctctttgtgcatct |
225 |
Q |
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| T |
2145294 |
ctttggtt-atctctttgtgcatct |
2145271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 42003993 - 42004054
Alignment:
| Q |
128 |
attgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
189 |
Q |
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| T |
42003993 |
attgtatagatggatggctcaagacaaatgctacctgccctttgtgtcgaaattttccagag |
42004054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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