View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_11 (Length: 277)
Name: NF17281_low_11
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_11 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 38 - 262
Target Start/End: Complemental strand, 54424980 - 54424749
Alignment:
| Q |
38 |
tattattaatcgtagaggtggtccagaccgtccttcctgggtcattagagg-------gatgctgtaaaaaactgcaacttatttgatatgcctcttcat |
130 |
Q |
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| T |
54424980 |
tattattaatcgtagaggtggtccagaccgtccttcgtggctcattagaggattccaagatgttgtaaaagactgcaacttatttgatatgcctcttcat |
54424881 |
T |
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| Q |
131 |
ggttaccaattcacatggttcaagagcatcggcacgccctcctccaaggaagctcgcattgaccgtgctctagtcacatcttcctggcaaacacttaatc |
230 |
Q |
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| T |
54424880 |
ggttgccaattcacatggttcaagagcatcggcacgccctcctccaaggaaactcgcattgaccgtgctctagtcacatcttcctggcaaacactttatc |
54424781 |
T |
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| Q |
231 |
caaacgctgccctccagactttggtggcctct |
262 |
Q |
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| T |
54424780 |
caaactctgccctccagaccttggtggcctct |
54424749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 20119878 - 20120093
Alignment:
| Q |
54 |
ggtggtccagaccgtccttcctgggtcattagagg-------gatgctgtaaaaaactgcaacttatttgatatgcctcttcatggttaccaattcacat |
146 |
Q |
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| T |
20119878 |
ggtggtccagaccgtccttcttggctcattagaggcttccaagatgctgttaaagactgcaacttatttgatatgcctctccacagttaccaattcacat |
20119977 |
T |
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| Q |
147 |
ggttcaagagcatcggcacgccctcctccaaggaagctcgcattgaccgtgctctagtcacatcttcctggcaaacacttaatccaaacgctgccctcca |
246 |
Q |
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| T |
20119978 |
ggttcaagagcatcggcacaccctcttccaaggaagcccgtattgatcgtgctttggtcacatcttcttggcaatcactatacccaaacgcttccctcca |
20120077 |
T |
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| Q |
247 |
gactttggtggcctct |
262 |
Q |
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| T |
20120078 |
gaccttggtggcctct |
20120093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 240176 - 240105
Alignment:
| Q |
130 |
tggttaccaattcacatggttcaagagcatcggcacgccctcctccaaggaagctcgcattgaccgtgctct |
201 |
Q |
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| T |
240176 |
tggttaccaatacacatggttcaaaagtatcggaactcactcttcgaaggaagcccgcattgaccgtgctct |
240105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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