View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_13 (Length: 238)
Name: NF17281_low_13
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9536300 - 9536080
Alignment:
| Q |
1 |
ttctctaattttattgagttgaacttccaattattcattaacttgttatttttattcaaaataggttcagcttggacaatgttatcaagatctttttctg |
100 |
Q |
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| T |
9536300 |
ttctctaattttattgagttgaacttccaatcattcattaacttgttatttttattcaaaataggttcagcttggacaatgttatcaagatctttttctg |
9536201 |
T |
|
| Q |
101 |
agtattgcattattgggtgggaaaatttaccaagaatcctcctcttatactacacaaattttgtttcatctccagaaggatatttccaaacagttatatg |
200 |
Q |
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| T |
9536200 |
agtattgcattattgggtgggaaaatttaccaagaatcctcctcttatactacacaaattttgtttcatctccagaaggatatttccaaacagttatatg |
9536101 |
T |
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| Q |
201 |
caattctaaagactacaagaa |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
9536100 |
caactctaaagactacaagaa |
9536080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 33720428 - 33720568
Alignment:
| Q |
63 |
aggttcagcttggacaatgttatcaagatctttttctgagtattgcattattgggtgggaaaatttaccaagaatcctcctcttatactacacaaatttt |
162 |
Q |
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||||||||| |||||||| |||||||||| ||||||||||||||||| || || ||||||||| | ||||| | || ||| | |||||||| || ||| |
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| T |
33720428 |
aggttcagcatggacaatagtatcaagatcattttctgagtattgcatcatgggatgggaaaatctgccaaggactctactcctctactacactaacttt |
33720527 |
T |
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| Q |
163 |
gtttcatctccagaaggatatttccaaacagttatatgcaa |
203 |
Q |
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| T |
33720528 |
gtctcatcaccagaaggatatttccaaacagtaatatgcaa |
33720568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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