View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_15 (Length: 226)
Name: NF17281_low_15
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_15 |
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| [»] chr8 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 474978 - 475193
Alignment:
| Q |
1 |
ttatttatgtcgataagcatcgctagcttatatatatattcttcaatagtcatgtaacctgacccctcttatannnnnnnnnnnnnnnnnnnnaggttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
474978 |
ttatttatgtcgataagcatcgctagcttatatat----tcttcaatagtcatgtaacctgacccctcttatatcttcttcttcttc------aggttcc |
475067 |
T |
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| Q |
101 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475068 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
475167 |
T |
|
| Q |
201 |
cttaatgcatggaagattaattctct |
226 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
475168 |
cttaatgcatggaaaattaattctct |
475193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 468517 - 468649
Alignment:
| Q |
94 |
aggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
193 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
468517 |
aggttccagcttatgcaagtcatcccaattacttatcactttgtgcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
468616 |
T |
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| Q |
194 |
gccagaccttaatgcatggaagattaattctct |
226 |
Q |
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||||||| |||||| |||||||||||| ||||| |
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| T |
468617 |
gccagactttaatggatggaagattaagtctct |
468649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 449121 - 449253
Alignment:
| Q |
94 |
aggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
193 |
Q |
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|||||||| |||| ||||| ||||| |||||||||||| | ||||| ||||||||| | ||| |||||||||||||| || |||| |||||||||| || |
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| T |
449121 |
aggttccatcttacgcaagccatcctaattatttatcattgtcagcctggatgtgtataatgtcaacattacaatcatcaatagtggcactattctttga |
449220 |
T |
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| Q |
194 |
gccagaccttaatgcatggaagattaattctct |
226 |
Q |
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|||| || | ||||||||||||||||| ||||| |
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| T |
449221 |
gccaaacttgaatgcatggaagattaaatctct |
449253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 457392 - 457524
Alignment:
| Q |
94 |
aggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
193 |
Q |
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||||||||||||| ||||| ||||| |||||| ||||| | ||||| ||||||||||| || |||||||||||||| || || | || ||||||| || |
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| T |
457392 |
aggttccagcttacgcaagccatcctaattatatatcattgtcagcttggatgtgtttaatttcaacattacaatcatcaatactgacgttattcttgga |
457491 |
T |
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| Q |
194 |
gccagaccttaatgcatggaagattaattctct |
226 |
Q |
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||||||||| ||||||||||| ||||||||||| |
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| T |
457492 |
gccagacctgaatgcatggaaaattaattctct |
457524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 480524 - 480654
Alignment:
| Q |
94 |
aggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
193 |
Q |
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||||||||||||||||||| ||||| ||||| || ||| || |||||||||||||||| ||| | ||||| |||||| || |||||||| ||||| | || |
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| T |
480524 |
aggttccagcttatgcaagccatcctaattacttgtcatttacagcatggatgtgtttaatgtctacatttcaatcaacagtagtcacattattcgtgga |
480623 |
T |
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| Q |
194 |
gccagaccttaatgcatggaagattaattct |
224 |
Q |
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||||||| |||| |||||||| |||||| |
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| T |
480624 |
atcagacctaaatgtttggaagatcaattct |
480654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 27490210 - 27490078
Alignment:
| Q |
94 |
aggttccagcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttaga |
193 |
Q |
| |
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|||||||||| |||||||| ||||| ||| ||||| |||||||| ||||||||||| |||||||||||||||||| || |||| ||||||||| | || |
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| T |
27490210 |
aggttccagcatatgcaagccatccaaataccttatctctttcagcctggatgtgtttaatggcaacattacaatcatcactagtgacactattcatgga |
27490111 |
T |
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| Q |
194 |
gccagaccttaatgcatggaagattaattctct |
226 |
Q |
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| T |
27490110 |
ggcagatctaaatgcgtggaagattacttctct |
27490078 |
T |
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