View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17281_low_18 (Length: 215)

Name: NF17281_low_18
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17281_low_18
NF17281_low_18
[»] scaffold0007 (1 HSPs)
scaffold0007 (17-205)||(182024-182212)
[»] chr4 (11 HSPs)
chr4 (15-202)||(30273867-30274054)
chr4 (17-202)||(20395494-20395679)
chr4 (18-202)||(18106614-18106798)
chr4 (17-202)||(42778136-42778321)
chr4 (15-195)||(34322374-34322554)
chr4 (17-202)||(53487010-53487195)
chr4 (17-202)||(53779943-53780128)
chr4 (17-202)||(29213038-29213223)
chr4 (17-202)||(10563366-10563551)
chr4 (74-153)||(461853-461932)
chr4 (150-202)||(449949-450001)
[»] chr7 (5 HSPs)
chr7 (17-202)||(34231597-34231782)
chr7 (17-202)||(29113606-29113791)
chr7 (17-202)||(7458728-7458913)
chr7 (17-181)||(4077194-4077358)
chr7 (158-204)||(28060473-28060519)
[»] chr1 (9 HSPs)
chr1 (25-202)||(17707894-17708071)
chr1 (20-202)||(10711221-10711403)
chr1 (15-202)||(30110980-30111166)
chr1 (17-199)||(47106737-47106919)
chr1 (47-202)||(41061231-41061386)
chr1 (125-202)||(26720597-26720674)
chr1 (17-88)||(26720673-26720744)
chr1 (15-78)||(28098016-28098079)
chr1 (9-78)||(21335418-21335487)
[»] chr3 (9 HSPs)
chr3 (16-202)||(33121373-33121559)
chr3 (24-202)||(47537166-47537344)
chr3 (17-202)||(19222023-19222206)
chr3 (41-202)||(26845769-26845930)
chr3 (24-201)||(50544120-50544297)
chr3 (15-63)||(48191836-48191884)
chr3 (171-205)||(8695102-8695136)
chr3 (171-205)||(9046989-9047023)
chr3 (15-63)||(43121721-43121769)
[»] chr6 (5 HSPs)
chr6 (17-202)||(17079248-17079433)
chr6 (17-202)||(9199309-9199494)
chr6 (17-202)||(11060916-11061101)
chr6 (17-155)||(17873875-17874013)
chr6 (17-89)||(18051506-18051578)
[»] chr2 (3 HSPs)
chr2 (17-202)||(1379980-1380165)
chr2 (18-202)||(2999806-2999990)
chr2 (9-66)||(11027134-11027191)
[»] chr8 (4 HSPs)
chr8 (17-202)||(23680060-23680245)
chr8 (17-202)||(17658729-17658914)
chr8 (11-199)||(45255879-45256067)
chr8 (17-202)||(26031390-26031575)
[»] chr5 (7 HSPs)
chr5 (15-195)||(4415755-4415935)
chr5 (17-202)||(7000822-7001007)
chr5 (17-202)||(4923132-4923317)
chr5 (17-202)||(20208776-20208961)
chr5 (17-199)||(6049124-6049306)
chr5 (57-201)||(40090238-40090382)
chr5 (76-202)||(34874559-34874681)
[»] scaffold0179 (1 HSPs)
scaffold0179 (17-202)||(7426-7611)


Alignment Details
Target: scaffold0007 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 182212 - 182024
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  182212 caggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacattgaag 182113  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcctttg 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  182112 cttctatgtgtgttacagattgtggcatgaatgaaacagcgcaacatttgtttctttcttgtgatgttttttcttctttatggcctttg 182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 30273867 - 30274054
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| || | | ||||| |||||||||||||||||||||||||||| | ||    
T  30273867 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtctattaaagctaatttggttcaaagacgggtgcttgacttaga 30273966  T
Q  115 agcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||| ||||||||||||    
T  30273967 agcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcct 30274054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 20395679 - 20395494
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||    ||||    
T  20395679 caggtgccgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaag 20395580  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||| ||||| ||||||    
T  20395579 cttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcct 20395494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18106614 - 18106798
Alignment:
Q  18 aggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagc 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||    |||||    
T  18106614 aggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaagc 18106713  T
Q  118 ttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| |||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||  ||||| ||||||||||||    
T  18106714 ttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcct 18106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 42778321 - 42778136
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||   ||||    
T  42778321 caggtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgactcagaag 42778222  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||  |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| || |||||||||    
T  42778221 cttcattgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 42778136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 34322374 - 34322554
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttga 114  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |   ||    
T  34322374 atcaggtgtcgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgtctcaga 34322473  T
Q  115 agcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttcttt 195  Q
    ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||| |||||    
T  34322474 agcttctctgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatcttt 34322554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 53487010 - 53487195
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||||||| |||||||||||||||||   ||||    
T  53487010 caggtgtcgttgaaggtttctttatttgcttggaggttgcttcgagatagattgcctactaaagctaatttggttgaaagacgggtgcttgactcagaag 53487109  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||| |||||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  53487110 cttctttgtgtgtttctgattgtggcatgtgtgaaacggcgcaacatttgtttctatcttgtgatgctttttcacctttatggcct 53487195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 53780128 - 53779943
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| || |||||||||||| ||||||||||||||||| |||| || |||||||||||||| || ||||||||  |||||   ||||    
T  53780128 caggtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaagttaatttggtccatagacgggtaattgacacagaag 53780029  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    || ||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  53780028 ctgctatgtgtgttacggattgtggcatgagtgaaacggcgcaacatttgtttttatcatgtgatgttttttcttctttatggcct 53779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 29213038 - 29213223
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| || |||||||||||| ||||||||||||||||| |||| || |||||||||||||| || ||||| ||  |||||   ||||    
T  29213038 caggtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaagttaatttggtccatagacgagtaattgacacagaag 29213137  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    || ||||||||||||| |||| |||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  29213138 ctgctatgtgtgttacggattctggcatgagtgaaacggcgcaacatttgtttttattgtgtgatgttttttcttctttatggcct 29213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 10563366 - 10563551
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| |||||||||| || |||||||||||| ||||||||||||||||| |||| || | |||||||||||| || ||||||||  |||||  |||||    
T  10563366 caggtgacgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaatagttaatttggtccatagacgggtaattgacactgaag 10563465  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |  ||||||||||||| ||||||||||||| ||||||| || | ||||||||| |||| |||||||||||||||||||||||||||    
T  10563466 cggctatgtgtgttacggattgtggcatgagtgaaacgacgtagcatttgtttttatcgtgtgatgttttttcttctttatggcct 10563551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 461932 - 461853
Alignment:
Q  74 actaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatgtgtgttacagattgtggcatgaatgaaac 153  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||| ||||||    
T  461932 actaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaaac 461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 450001 - 449949
Alignment:
Q  150 aaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  450001 aaacagcgcaacatttgtttctatcttgtgacgctttttcttctttatggcct 449949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 34231782 - 34231597
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||    
T  34231782 caggtgtcgttgaaggtttctttatttgcttggaggctgcttcgtgatagactgcctactaaagctaatttggttcaaagacgggtgcttgacttagaag 34231683  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  34231682 cttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacactttttcatctttatggcct 34231597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 29113606 - 29113791
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||||   ||||    
T  29113606 caggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgagtgcttgactccgaag 29113705  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||| ||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||| | |||||| ||||| ||||||    
T  29113706 cttctttgtgtgttttagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttttggcct 29113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 7458728 - 7458913
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| |||||||| |||||||| || ||||||||  |||||  |||||    
T  7458728 caggtgccgttgaaagtttctttatttgcttggcggttgcttcgtgatagattgcctactaaagtgaatttggtccatagacgggtaattgacactgaag 7458827  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |  |||||||||||||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  7458828 cggctatgtgtgttacagattgtggcatgagcgaaacggcgcaacatttgtttttatcgtgtgatgttttttcttctttatggcct 7458913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 4077358 - 4077194
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||| |||| |||||||  |||||||| |||||| || || ||||    ||||    
T  4077358 caggtgccgttgaaggtttctatttttgcttggaggttgcttcgtgatagattgcctactaaagacaatttggtccaaagaaggatgattgataccgaag 4077259  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgat 181  Q
    |||||||||||||| ||||||||||| |   |||||||||||  ||||| ||| |||||||||||    
T  4077258 cttctatgtgtgtttcagattgtggcttttgtgaaacggcgcggcatttatttttatcttgtgat 4077194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 28060519 - 28060473
Alignment:
Q  158 caacatttgtttctatcttgtgatgttttttcttctttatggccttt 204  Q
    |||||||||||| ||||||| |||| |||||| ||||||||||||||    
T  28060519 caacatttgtttttatcttgcgatgctttttcatctttatggccttt 28060473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 17708071 - 17707894
Alignment:
Q  25 gttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatg 124  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| | ||||||||| ||    
T  17708071 gttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttg 17707972  T
Q  125 tgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||| ||||||||||||    
T  17707971 tgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcct 17707894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 10711221 - 10711403
Alignment:
Q  20 gtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagctt 119  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||   |||||||    
T  10711221 gtgccgttgaaggtttctttattttcttagaggttgcttcgtgatagattgcctactaaagttaatatggttcaaagatgggtgcttgacacagaagctt 10711320  T
Q  120 ctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  10711321 ccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatctttatggcct 10711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 30110980 - 30111166
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||         
T  30110980 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagtcaatttggctcaaagacgggtgcttgacacaag 30111079  T
Q  115 agcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||||| |||||||| |||| |||||||||  ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  30111080 agcttctttgtgtgtttcagactgtggcatgtgtgaaaaggcgcaacatttgtttctatcttgtgatg-tttttcatctttatggcct 30111166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 47106737 - 47106919
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| ||  | ||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |||| ||||| | ||| | ||||    
T  47106737 caggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgacatagaag 47106836  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatgg 199  Q
    ||||| |||||||| || |||||||||||| ||||||||||||||||||| || ||||||||||||  |||||  ||||||||    
T  47106837 cttctttgtgtgtttcaaattgtggcatgagtgaaacggcgcaacatttgattttatcttgtgatgcattttcacctttatgg 47106919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 41061231 - 41061386
Alignment:
Q  47 tggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatgtgtgttacagattgtggcatga 146  Q
    ||||||||||||||| ||||| |||| ||||||| ||||||||| |  ||| ||||| ||||    |||||||| ||||||||| ||| |||||||||||    
T  41061231 tggaggttgcttcgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagcttcgatgtgtgtttcagtttgtggcatga 41061330  T
Q  147 atgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
      ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  41061331 gagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct 41061386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 26720674 - 26720597
Alignment:
Q  125 tgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  26720674 tgtgtttcagattgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct 26720597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 26720744 - 26720673
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttg 88  Q
    |||||||||||||| || || ||||||||||| |||||||| ||| ||||| |||| ||||||| |||||||    
T  26720744 caggtgccgttgaaagtctctttatttgcttgtaggttgctacgtaatagattgcctactaaagataatttg 26720673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 28098016 - 28098079
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaa 78  Q
    ||||||||||||||||||||||  | ||||| | ||||||||||||||| ||| |||| |||||    
T  28098016 atcaggtgccgttgaaggtttctatctttgcctagaggttgcttcgtgacagattgccaactaa 28098079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 21335418 - 21335487
Alignment:
Q  9 gacatcatcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaa 78  Q
    ||||| ||||||||||||||||||| ||  | |||||||||||||| ||||| || ||| |||| |||||    
T  21335418 gacataatcaggtgccgttgaaggtctctatctttgcttggaggtttcttcgggacagattgccaactaa 21335487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 33121373 - 33121559
Alignment:
Q  16 tcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||    |||    
T  33121373 tcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaa 33121472  T
Q  116 gcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||| |||||||  ||||||||||||||| |||||| ||||||||||||||||||||||||||||  || || ||||||||||||    
T  33121473 gcttctttgtgtgtctcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgcattctcatctttatggcct 33121559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 47537344 - 47537166
Alignment:
Q  24 cgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctat 123  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||    |||||||||||    
T  47537344 cgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaagcttctat 47537245  T
Q  124 gtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||| ||||| ||||||    
T  47537244 gtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcct 47537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 19222206 - 19222023
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||| |||| |||| ||||||||||||||||| ||||||  |||| |||||   ||||    
T  19222206 caggtgctgttgaaggtctctttatttgcttggaggtttcttcgtg-tagattgcctactaaagttaatttggtccaaagaatggtgattgacacagaag 19222108  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||||||||||||  ||||| ||||||||||||    
T  19222107 cttctatgtgtgtttcagattgtgccatgagtgaaacggcgc-acatttgtttttatcttgtgatgcattttcatctttatggcct 19222023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 26845930 - 26845769
Alignment:
Q  41 tttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatgtgtgttacagattgtg 140  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| ||||||||| |  ||| ||||| ||||    |||||||| ||||||||| ||| |||||    
T  26845930 tttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagcttcgatgtgtgtttcagtttgtg 26845831  T
Q  141 gcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||||  ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  26845830 gcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct 26845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 50544297 - 50544120
Alignment:
Q  24 cgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctat 123  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||| ||||||| |||   || ||||||||    
T  50544297 cgttgaaggtctctatatttgcttggaggttgcttcgtgatagattgcctactaaagtgaatttggtccaaagaagggtgctagacacagatgcttctat 50544198  T
Q  124 gtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcc 201  Q
    ||||||| ||||||||||| |   |||||||||||||||||| ||| |||| ||||||   ||||| |||||||||||    
T  50544197 gtgtgtttcagattgtggcttttgtgaaacggcgcaacatttatttttatcatgtgataccttttcatctttatggcc 50544120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 48191884 - 48191836
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtga 63  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  48191884 atcaggtgccgttgaaggcttctttatttgcttggaggttgcttcgtga 48191836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 8695102 - 8695136
Alignment:
Q  171 tatcttgtgatgttttttcttctttatggcctttg 205  Q
    |||||||||||||||||||||||||||||||||||    
T  8695102 tatcttgtgatgttttttcttctttatggcctttg 8695136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 9046989 - 9047023
Alignment:
Q  171 tatcttgtgatgttttttcttctttatggcctttg 205  Q
    |||||||||||||||||||||||||||||||||||    
T  9046989 tatcttgtgatgttttttcttctttatggcctttg 9047023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 43121721 - 43121769
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtga 63  Q
    ||||||||||||||||||| ||  | ||||| |||||||||||||||||    
T  43121721 atcaggtgccgttgaaggtctctatctttgcctggaggttgcttcgtga 43121769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 17079248 - 17079433
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |   ||||    
T  17079248 caggtgccgttgaaggtttctctattttcttgaaggttgcttcgtgatagattgcccactaaagttaatttggttcaaagacgggtgcttgtcacagaag 17079347  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||||||| |||| ||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17079348 cttctatgtatgtttcaggttgtggcatgagtgaatcggcgcgacatttgtttctatcttgtgatgttttttcatctttatggcct 17079433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 9199309 - 9199494
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||| | ||||||||| ||||||||||||||||   ||||    
T  9199309 caggtgtcgttgaaggtttctttatttgcttggaggttgcttcgtgatggattgcctactaaagctgatttggttcgaagacgggtgcttgactcagaag 9199408  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||  |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| || |||||||||    
T  9199409 cttcattgtgtgtttcagattgtggcatgagtgaaatggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 9199494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 11060916 - 11061101
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| |||||||| |||||||| ||||| |||||| |||| |||||||||||||||||||||||| ||||||||||    ||||    
T  11060916 caggtgccgttgaaggtttctttatttgcatggaggttccttcgggatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaag 11061015  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  ||||||||| |||||| ||||||||||||    
T  11061016 cttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttcctgacttgtgatgctttttcatctttatggcct 11061101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 17873875 - 17874013
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| || ||||||||| || ||||||||||||||||| |||| || |||||||||||||| || ||||||||  |||||   ||||    
T  17873875 caggtgccgttgaaggtatctttatttgctcggcggttgcttcgtgatagattgcctacaaaagttaatttggtacatagacgggtaattgacacagaag 17873974  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacgg 155  Q
    || |||| |||||||| ||||||||||||| ||||||||    
T  17873975 ctgctatatgtgttacggattgtggcatgagtgaaacgg 17874013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 18051506 - 18051578
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttgg 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  18051506 caggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtccactaaagttaatttgg 18051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 1380165 - 1379980
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||   ||||    
T  1380165 caggtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgactcagaag 1380066  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  1380065 cttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 1379980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 2999806 - 2999990
Alignment:
Q  18 aggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagc 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||    |||||    
T  2999806 aggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaagc 2999905  T
Q  118 ttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| |||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||  ||||| ||||||||||||    
T  2999906 ttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcct 2999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 11027191 - 11027134
Alignment:
Q  9 gacatcatcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatag 66  Q
    ||||| |||||||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  11027191 gacataatcaggtgccgttgaaggtttctttctttgcgtggaggttgcttcatgatag 11027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 23680245 - 23680060
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||    ||||    
T  23680245 caggtgtcgttgaaagtttctttatttgcgtggaggttgcttcgtgatagtttgcctactaaagttaatttggttcaaagaagggtgcttgatacagaag 23680146  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||| ||||||||||||    
T  23680145 cttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttaacttgtgatgctttttcatctttatggcct 23680060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 17658914 - 17658729
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| ||||||||||||| |||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||     |||    
T  17658914 caggtgtcgttgaaggtttctttatttgcgtggaggttgcttcgagatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacaaaag 17658815  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| ||||||||| ||||||||||||| | ||||||||||||||||||||| ||| |||||||||  ||||| ||||||||||||    
T  17658814 cttccatgtgtgtttcagattgtggcataagtgaaacggcgcaacatttgttcctaacttgtgatgcgttttcatctttatggcct 17658729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 45255879 - 45256067
Alignment:
Q  11 catcatcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacg 110  Q
    ||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |||| ||||| | |||     
T  45255879 catcaccaggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgact 45255978  T
Q  111 ttgaagcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatgg 199  Q
      ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||  ||||||||    
T  45255979 cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 45256067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26031575 - 26031390
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||| ||||| || || ||||||  |||||||||||| ||| ||||| |||| ||||||| ||||||||  |  |||  |||| ||||    ||||    
T  26031575 caggtgccattgaaagtctctttatttatttggaggttgctccgtaatagattgcctactaaagataatttggcccttagaaaggtgattgattcagaag 26031476  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| ||||||||| | |||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  26031475 cttcgatgtgtgtttctgattgtggcatgagagaaacggcgcaacatttgtttttatcctgtgatgttttttcttctttatggcct 26031390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 4415755 - 4415935
Alignment:
Q  15 atcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||   ||    
T  4415755 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttgattcaaagacgggtgcttgactcaga 4415854  T
Q  115 agcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttcttt 195  Q
    ||||||| |||||||| ||||||||||||| | ||||||  ||||||||||||||||||||||||| | |||||| |||||    
T  4415855 agcttctctgtgtgtttcagattgtggcattagtgaaacaacgcaacatttgtttctatcttgtgacgctttttcatcttt 4415935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 7000822 - 7001007
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||   ||||    
T  7000822 caggtgtcgttgaaggttttcttatttgcgtggaggttgcttcgtgatagattgcctactaaggttaatttggttcaaagaagggtgcttgactcagaag 7000921  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||| |||||||| ||||||||||||||| ||||||||  ||||||||||||||| ||||||||   |||||  |||||||||||    
T  7000922 cttctctgtgtgtttcagattgtggcatgagtgaaacggtacaacatttgtttctaacttgtgataccttttcacctttatggcct 7001007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 4923317 - 4923132
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||||||| || | | ||||| ||||||||| |  ||| ||||| ||||    ||||    
T  4923317 caggtgccgttgaaggtctctttatttgcttggaggttgctacgtgatagattgtctaataaagataatttggtccttagaagggtgattgattcagaag 4923218  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  4923217 cttcgatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcttttgcttctttatggcct 4923132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 20208776 - 20208961
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    |||||||||||||| || || |||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||| |  ||| ||||| ||||    ||||    
T  20208776 caggtgccgttgaaagtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaag 20208875  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    ||||  |||||||| |||||||||||||||  ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  20208876 cttcgttgtgtgtttcagattgtggcatgagagaaacggcgcaacatttatttttatcttgtgatgctttttcttctttatggcct 20208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 6049306 - 6049124
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| ||  | ||||||||||||||||||||||||||  |||| ||||||| ||||||||| | |||| ||||| | |||   ||||    
T  6049306 caggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgataggttgcctactaaagataatttggtccgaagaagggtgatcgacacagaag 6049207  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatgg 199  Q
    ||||| |||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||  |||||  ||||||||    
T  6049206 cttctttgtgtgtttcagattgtggcatgagtgaaacggcacaacatttgtttttatcttgtgatgcattttcacctttatgg 6049124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 40090382 - 40090238
Alignment:
Q  57 ttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatgtgtgttacagattgtggcatgaatgaaacggc 156  Q
    ||||||||||| |||| ||||||||||||||||| |||||| ||||| |||||   ||||||||||||||||||    |||||||| |   |||| ||||    
T  40090382 ttcgtgatagattgcctactaaagttaatttggtccaaagaagggtgattgacaccgaagcttctatgtgtgttttttattgtggcttttgtgaatcggc 40090283  T
Q  157 gcaacatttgtttctatcttgtgatgttttttcttctttatggcc 201  Q
    |||||| |||||| |||||||||||   ||||| |||||||||||    
T  40090282 gcaacacttgtttttatcttgtgataccttttcatctttatggcc 40090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 34874559 - 34874681
Alignment:
Q  76 taaagttaatttggttcaaagacgggtgcttgacgttgaagcttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatct 175  Q
    |||||||||||||||||||||| || |||||||     |||||||||||||||||  ||||||| || ||| |||||||||||||||    |||||| ||    
T  34874559 taaagttaatttggttcaaagaaggatgcttgatacaaaagcttctatgtgtgttttagattgtcgcttgagtgaaacggcgcaaca----tttctaact 34874654  T
Q  176 tgtgatgttttttcttctttatggcct 202  Q
    |||||||  ||||| ||||||||||||    
T  34874655 tgtgatgcattttcatctttatggcct 34874681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 7611 - 7426
Alignment:
Q  17 caggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacgttgaag 116  Q
    ||||||||||||||||| || |||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||| |  ||| ||||| ||||  | ||||    
T  7611 caggtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatttagaag 7512  T
Q  117 cttctatgtgtgttacagattgtggcatgaatgaaacggcgcaacatttgtttctatcttgtgatgttttttcttctttatggcct 202  Q
    |||| ||||||||| ||| |||||||||||  ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  7511 cttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttatttatggcct 7426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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