View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_2 (Length: 541)
Name: NF17281_low_2
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 40 - 493
Target Start/End: Complemental strand, 33998528 - 33998081
Alignment:
| Q |
40 |
ttcacaggaggtttacgccctgtcgcttcagctggctcagttcttcatcattacatgggcatggtattagatcacaaaagaaaggtgagttgcatgagtt |
139 |
Q |
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| T |
33998528 |
ttcacaggaggtttacgccctgtcgcttcagctggctcagttcttcatcattacatgggcatggtattagatcacaaaagaaaggtgagttgcatgagtt |
33998429 |
T |
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| Q |
140 |
aaaagaaaacattgatagagtttctctgttcagttttttgttaacagcttaaataatgttctgctttatttagacatacagaatcctaaacctgataaca |
239 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33998428 |
aagagaaaacattgatagagtttctctgttcagttttttattaacagcttaaataatgttctgctttatttagacatacagaaccctaaacctgataaca |
33998329 |
T |
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| Q |
240 |
ttgagtttttgtttgataagtgttattgacttacttgtttatcatgaactgtttgtgtttgtgtacctatttaaagcaatacttttcgctttattagtac |
339 |
Q |
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| T |
33998328 |
ttgagtttttgtttgataagtgttattgacttacttgtttatcatgaactgttt------gtgtacctatttaaagcaatacttttcgctttattagtac |
33998235 |
T |
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| Q |
340 |
caagaactaatcccaatatcactcgactcaaccaaacttatttttcaattcttgtataagctataatagcctgtatttgacttttatctttacaaaagaa |
439 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33998234 |
caagagctaatcccaatatcactcgactcaaccaaacttatttttcaattcttgtataagctataatagcctgtatttgacttttatctttacaaaagaa |
33998135 |
T |
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| Q |
440 |
aaagtcacttatctcgtgatatgaattactgtttcagtggtttgtctcaagctt |
493 |
Q |
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| T |
33998134 |
aaagtcacttatctcgtgatatgaattactgtttcagtggtttgtctcaagctt |
33998081 |
T |
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