View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_3 (Length: 503)
Name: NF17281_low_3
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Original strand, 41497336 - 41497826
Alignment:
| Q |
13 |
atcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcatatatatcatatcag |
112 |
Q |
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| T |
41497336 |
atcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcatatatatcatatcat |
41497435 |
T |
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| Q |
113 |
atgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaacaaaggaaatagtaa |
212 |
Q |
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| T |
41497436 |
atgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaacaaaggaaatagtaa |
41497535 |
T |
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| Q |
213 |
aaataaacataaaagaacacaatttcaggattagttactcgtgtaccgtattttcttgcaccctgattttgtaagggttgagtttaactcgacacaaatt |
312 |
Q |
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| T |
41497536 |
aaataaacataaaagaacacaatttcaggattagatactcgtgtgccgtattttcttgcaccctgattttgtaagggttgagtctaactcgacacaaatt |
41497635 |
T |
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| Q |
313 |
ttaaattggtacgagagtgaagtgttgagttaagttcaaaccaaattctaagactcacctaggttataaatctcatggcttaacctttccttacaatttt |
412 |
Q |
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| T |
41497636 |
ttaaattggtacgaaagtgaagggttgaattaagttcaaaccaaattctaagactcacctaggttataaatctcatggcttaacctttccttacaatttt |
41497735 |
T |
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| Q |
413 |
gcagcgaatcttctcccccaaggtagagtaaaagtattatccaattagtttgtttaactagtcgactaaaataataagagtctaacatgtg |
503 |
Q |
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| T |
41497736 |
ggagtgaatcttctcccccaaggtagagtaaaagtattatccaattagtttgtttaactagtcgactaaaataataagagtctaacatgtg |
41497826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 41491103 - 41491149
Alignment:
| Q |
13 |
atcactctcctattgaccaacggtgttccaggactgcaggttctcat |
59 |
Q |
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| T |
41491103 |
atcactctcctattaaccaacggtgttccaggactgcaggttctcat |
41491149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 41483257 - 41483306
Alignment:
| Q |
13 |
atcactctcctattgaccaacggtgttccaggactgcaggttctcatctt |
62 |
Q |
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|||||||||||| | ||||| |||||||||||||| ||||||| |||||| |
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| T |
41483257 |
atcactctcctaatcaccaatggtgttccaggactacaggttcacatctt |
41483306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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