View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17281_low_5 (Length: 400)

Name: NF17281_low_5
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17281_low_5
NF17281_low_5
[»] chr4 (18 HSPs)
chr4 (16-184)||(41497806-41497975)
chr4 (100-292)||(47838941-47839133)
chr4 (260-381)||(41497985-41498107)
chr4 (101-243)||(54358171-54358312)
chr4 (102-254)||(37674000-37674151)
chr4 (101-256)||(18375390-18375543)
chr4 (101-200)||(17847541-17847639)
chr4 (102-256)||(24683122-24683275)
chr4 (101-256)||(41633263-41633416)
chr4 (101-256)||(23348112-23348269)
chr4 (101-249)||(4512161-4512309)
chr4 (102-203)||(41878615-41878715)
chr4 (130-256)||(26179238-26179363)
chr4 (101-249)||(54021241-54021391)
chr4 (101-143)||(52726030-52726072)
chr4 (103-136)||(47282226-47282259)
chr4 (184-256)||(30508988-30509060)
chr4 (157-201)||(47281587-47281630)
[»] chr8 (18 HSPs)
chr8 (101-256)||(29314045-29314199)
chr8 (101-256)||(36473048-36473202)
chr8 (101-256)||(15561913-15562067)
chr8 (101-256)||(41322575-41322729)
chr8 (101-259)||(39112691-39112848)
chr8 (101-256)||(2001694-2001847)
chr8 (101-184)||(33888965-33889048)
chr8 (158-256)||(4851779-4851876)
chr8 (130-280)||(11643303-11643455)
chr8 (103-184)||(11653712-11653793)
chr8 (100-181)||(37919507-37919588)
chr8 (101-256)||(34392154-34392299)
chr8 (101-147)||(4824296-4824342)
chr8 (101-256)||(1005635-1005792)
chr8 (165-256)||(8551535-8551625)
chr8 (105-147)||(34392112-34392154)
chr8 (101-138)||(13357629-13357666)
chr8 (260-292)||(1196504-1196536)
[»] chr2 (21 HSPs)
chr2 (101-256)||(13686039-13686193)
chr2 (101-256)||(25414959-25415113)
chr2 (101-256)||(14940986-14941141)
chr2 (102-256)||(19898965-19899118)
chr2 (105-241)||(41464902-41465037)
chr2 (101-243)||(45093148-45093289)
chr2 (101-256)||(28429327-28429478)
chr2 (100-256)||(35323473-35323628)
chr2 (121-256)||(3810288-3810422)
chr2 (100-203)||(28716315-28716417)
chr2 (102-256)||(42263877-42264030)
chr2 (122-256)||(40126520-40126653)
chr2 (101-256)||(35676270-35676430)
chr2 (101-146)||(2752614-2752659)
chr2 (159-242)||(29689277-29689359)
chr2 (101-184)||(36690818-36690903)
chr2 (101-142)||(24413862-24413903)
chr2 (260-294)||(13685988-13686022)
chr2 (105-147)||(13685997-13686039)
chr2 (161-249)||(2752692-2752779)
chr2 (228-256)||(23454386-23454414)
[»] chr1 (19 HSPs)
chr1 (101-256)||(31032696-31032850)
chr1 (101-255)||(44714807-44714960)
chr1 (102-256)||(47550837-47550990)
chr1 (101-256)||(16254900-16255054)
chr1 (101-256)||(20808993-20809147)
chr1 (101-256)||(34475945-34476099)
chr1 (110-256)||(29095530-29095675)
chr1 (101-256)||(42480167-42480323)
chr1 (109-256)||(1270217-1270363)
chr1 (104-184)||(9098571-9098651)
chr1 (103-259)||(34807979-34808134)
chr1 (104-172)||(41647356-41647424)
chr1 (101-203)||(4624444-4624538)
chr1 (116-243)||(2958710-2958831)
chr1 (101-184)||(45010316-45010399)
chr1 (192-256)||(4194812-4194876)
chr1 (161-256)||(24135801-24135893)
chr1 (225-256)||(41646621-41646652)
chr1 (260-292)||(20808944-20808976)
[»] chr6 (6 HSPs)
chr6 (101-259)||(7646773-7646930)
chr6 (115-256)||(25935554-25935694)
chr6 (128-256)||(29487541-29487668)
chr6 (165-256)||(12607123-12607213)
chr6 (101-177)||(12607030-12607107)
chr6 (101-184)||(17366939-17367016)
[»] chr3 (13 HSPs)
chr3 (92-256)||(521754-521917)
chr3 (101-256)||(50612873-50613027)
chr3 (103-256)||(45166272-45166424)
chr3 (121-256)||(20912213-20912347)
chr3 (101-256)||(31788351-31788505)
chr3 (101-256)||(36517560-36517714)
chr3 (101-256)||(39145297-39145451)
chr3 (103-256)||(38176390-38176542)
chr3 (101-246)||(23642978-23643122)
chr3 (101-255)||(51297022-51297177)
chr3 (101-256)||(52546788-52546942)
chr3 (101-256)||(34624486-34624629)
chr3 (130-256)||(1561283-1561408)
[»] chr5 (19 HSPs)
chr5 (101-256)||(4391844-4391998)
chr5 (101-240)||(5481414-5481552)
chr5 (101-256)||(32891220-32891374)
chr5 (103-256)||(37093912-37094064)
chr5 (101-256)||(3456798-3456949)
chr5 (128-259)||(28434244-28434374)
chr5 (101-249)||(34286646-34286793)
chr5 (101-256)||(228069-228223)
chr5 (101-200)||(8692610-8692708)
chr5 (137-256)||(35672345-35672462)
chr5 (101-174)||(42148957-42149030)
chr5 (153-256)||(38614231-38614333)
chr5 (121-203)||(40925934-40926015)
chr5 (121-201)||(31644727-31644808)
chr5 (158-252)||(29223513-29223606)
chr5 (101-145)||(43141519-43141563)
chr5 (222-256)||(31644684-31644718)
chr5 (145-202)||(6614289-6614345)
chr5 (216-289)||(42148869-42148944)
[»] chr7 (6 HSPs)
chr7 (101-256)||(23991949-23992103)
chr7 (122-256)||(27425773-27425906)
chr7 (101-287)||(42195390-42195577)
chr7 (157-253)||(22326907-22327002)
chr7 (101-184)||(8307639-8307723)
chr7 (192-288)||(25686376-25686475)
[»] scaffold0002 (1 HSPs)
scaffold0002 (102-256)||(492712-492865)
[»] scaffold0339 (1 HSPs)
scaffold0339 (101-166)||(13378-13442)
[»] scaffold0132 (2 HSPs)
scaffold0132 (225-256)||(582-613)
scaffold0132 (225-256)||(8542-8573)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 41497806 - 41497975
Alignment:
Q  16 ataataagagtctaacatgtgtctaagcacacacaaaaaatatacacggagctcaactttgagagcgttaagagaataatatacgggaaaatgctatttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41497806 ataataagagtctaacatgtgtctaagcacacacaaaaaatatacacggagctcaactttgagagcgttaagagaataatatac-ggaaaatgctatttc 41497904  T
Q  116 tctataaaaatagcatcaagaatttttcaag--acacagttggtaagttttaattgcatgatttatttgtt 184  Q
    |||| |||||||||||||| |||| ||||||  ||||||||| ||||||||||||||||||||||||||||    
T  41497905 tctaaaaaaatagcatcaaaaattattcaagacacacagttgataagttttaattgcatgatttatttgtt 41497975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 47838941 - 47839133
Alignment:
Q  100 gggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctattttt 199  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||| | |||| ||||||||||||||||    
T  47838941 gggaacatgctatttctctataaaaatagcatcaagaa-ttttcaagacacagctggtgagatttaattgcatgatgtttttg-ttcattttctattttt 47839038  T
Q  200 cagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttattttt--tgttatttttctaaagatatagcattgctcata 292  Q
    | || | | ||| ||||||| ||| ||||||| ||||||| |||||||||||||||| ||   |||||||||||| |||||||||||||||||||    
T  47839039 cggccacacctccttaaattgtggcaaatagtacattgtggttgactgctctttattcttgaagttatttttctagagatatagcattgctcata 47839133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 41497985 - 41498107
Alignment:
Q  260 tgttatttttctaaagatatagcattgctcataatatactagcaagtagcaatacnnnnnnnnn-agagaagcaagtagcaatacttgtatggtcacaaa 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  41497985 tgttatttttctaaagatatagcattgctcataatatactagcaagtagcaatacttttttttttagagaagcaagtagcaatacttgtatggtcacaaa 41498084  T
Q  359 tacaaatgttttgaatttagtca 381  Q
    |||||||||||||||||||||||    
T  41498085 tacaaatgttttgaatttagtca 41498107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 54358312 - 54358171
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttg-ttcacttcctatttttc 54358214  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattg 243  Q
    ||| | | | | ||||||| ||| |||||||||||||||||||    
T  54358213 agccacacccccttaaattgtggcaaatagtgcattgtgattg 54358171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 37674000 - 37674151
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||   ||  ||||||||||||||||||||||||| || | ||| |||||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttg-ttaactttttatttttca 37674098  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctcttta 254  Q
    || | | |||||| |||| | ||||||||| ||||||||||||||||||||||    
T  37674099 gccacacctctttgaattgtagtaaatagtacattgtgattgactgctcttta 37674151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 18375390 - 18375543
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||| |||| || ||| |||||    
T  18375390 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttg-ttcacttccta-ttttc 18375487  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||||||||||||||||||||| || |||||||    
T  18375488 agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttatt 18375543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 17847541 - 17847639
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  17847541 ggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttg-ttcactttctatttttc 17847639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 24683275 - 24683122
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||| ||||||| || |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| || ||||||||||    
T  24683275 gaaaatgttatttctttagaaaaatagtatcaagaatttttcaagacacacttgataagttttaattgcatgatttatttg-ttcacttcctatttttca 24683177  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |  | | ||   | |||| ||| ||||||||||||||||||| ||||||||||||    
T  24683176 gtcacaccttcctgaattgtggcaaatagtgcattgtgattggctgctctttatt 24683122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 41633416 - 41633263
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||  || |||||||| ||| ||||||||| |||| || |||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacaaagctgacaaattttaattacat-atttatttg-ttcacttcctatttttc 41633319  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| || |||||||||||||||| ||||||||||||    
T  41633318 agccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttatt 41633263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 23348112 - 23348269
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcatt--ttctatttt 198  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| |||   |  |||||||||||||||||||||||||||   ||  | |||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttcacttcctcctatttt 23348211  T
Q  199 tcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||||| | | ||| || ||||||||||||||||| ||||||||||| || ||||||||    
T  23348212 tcagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttatt 23348269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 4512161 - 4512309
Alignment:
Q  101 ggaaaatgctatttctctataaaa-atagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctattttt 199  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||||||| | || ||||||||    
T  4512161 ggaaaatgttatttctctagaaaaaatagcatcaagaatttttcaatactcaggtggcaagttttaattgcatcatttatttgttt-acttcctattttt 4512259  T
Q  200 cagctaaatctctttaaattatggtaaatagtgcattgtgattgactgct 249  Q
    |||  | ||||| || |||| ||| |||||||  ||||||||||||||||    
T  4512260 cagtcacatctccttgaattgtggcaaatagtatattgtgattgactgct 4512309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 41878715 - 41878615
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||| |  ||  |||||||||||||||||||||||||||| | || ||||||||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgttt-acttcctatttttca 41878617  T
Q  202 gc 203  Q
    ||    
T  41878616 gc 41878615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 26179238 - 26179363
Alignment:
Q  130 atcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaata 229  Q
    ||||||||||||| || |||||| ||  |||||| ||||  |||||||||||||| || || |||||||||||| | | ||| || |||| || ||||||    
T  26179238 atcaagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgtt-cacttcctatttttcagccacacctccttgaattgtgttaaata 26179336  T
Q  230 gtgcattgtgattgactgctctttatt 256  Q
    ||||| |||||||| ||||||||||||    
T  26179337 gtgcactgtgattggctgctctttatt 26179363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 54021241 - 54021391
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaa---ttgcatgatttatttgtttcattttctattt 197  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||| | || ||  |||||||||   ||   || ||||||||||| | |||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagataaagctgacaagttttaatttttaattgctttatttgttt-actttctattt 54021339  T
Q  198 ttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgct 249  Q
    |||| | | | ||| ||||||| ||| | ||||||||||||||||| |||||    
T  54021340 ttcaaccacacctccttaaattgtggcacatagtgcattgtgattggctgct 54021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 52726072 - 52726030
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttc 143  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  52726072 ggaaaatgctatttctctagaaaaatagcatcaagaatttttc 52726030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaaga 136  Q
    ||||||||||||||||| ||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 30509060 - 30508988
Alignment:
Q  184 ttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||||||| ||||||||||| || |||||| |  |||  || |||||||| ||||| |||||||||||||||||    
T  30509060 ttcatttcctatttttcagttacatctctgtgtattgcggcaaatagtgtattgtaattgactgctctttatt 30508988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 47281587 - 47281630
Alignment:
Q  157 taagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  47281587 taagttttaattgcatgatttatttg-ttcacttcctatttttca 47281630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 29314199 - 29314045
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||    
T  29314199 ggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaagacacagttggtaagttttaattgcattatttatttg-tccactttctatttttc 29314101  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| ||||||| ||| |||||||||||||||||||||| |||||||||    
T  29314100 agtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttatt 29314045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 36473048 - 36473202
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttg-ttcacttcctatttttc 36473146  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| ||||||| ||  |||||||| | |||||||||||||||||||||    
T  36473147 agccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttatt 36473202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 15561913 - 15562067
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||| || |||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttg-ttcacttcctatttttc 15562011  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||||| ||||||  ||||||||| | ||||||    
T  15562012 agccacacctccttgaattgtggcaaataatgcattacgattgactgttatttatt 15562067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 41322729 - 41322575
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||| || | || |||||||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacatagttagcaagttttaattgcatgatttaattg-ttaacttcctatttttc 41322631  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
      | | | ||| || |||| |   ||||||||||||||||||||||||||||||||    
T  41322630 taccacacctccttgaattttcacaaatagtgcattgtgattgactgctctttatt 41322575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 39112848 - 39112691
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||  |||||| ||||||||||| ||   |||||||||||||| |||| || ||||||||| |||||||||||| |||| ||||||||||||    
T  39112848 ggaaaatgctacatctctagaaaaatagcattaaatttttttcaagacacaattggcaaattttaattggatgatttatttg-ttcactttctatttttc 39112750  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttattttt 259  Q
    |||   | ||| || |||||||| |||||||||||||||||||  ||||||||||||||    
T  39112749 agccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttattttt 39112691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 2001847 - 2001694
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| ||||||||||||||   ||||||||||||||| ||  ||||||||||| ||||||||||||| |||| | |||||||| |    
T  2001847 ggaaaatgttatttctctagaaaaatagcatcaaatttttttcaagacacagctgccaagttttaattacatgatttatttg-ttcactatctattttcc 2001749  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| ||||||| ||| |||| ||| ||| |||||||||||||||||||    
T  2001748 agccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttatt 2001694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 33889048 - 33888965
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||  ||||||||||||||| |||||||||||    
T  33889048 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgtt 33888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 4851876 - 4851779
Alignment:
Q  158 aagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| | |  || ||||||| ||| |||||||||||| |||||||||||||||||||    
T  4851876 aagttttaattgcatgatttatttgttt-atttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattgactgctctttatt 4851779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 11643455 - 11643303
Alignment:
Q  130 atcaagaatttttcaagacacagt-tggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaat 228  Q
    |||||||||||||  ||||||||  ||| || ||||||||| |||||||||||||| || ||  ||||||||| ||| |  |  ||||||| ||||||||    
T  11643455 atcaagaattttttcagacacagcatggcaaattttaattgtatgatttatttgtt-cacttcgtatttttcaactacactttcttaaattgtggtaaat 11643357  T
Q  229 agtgcattgtgattgactgctctttattttt--tgttatttttctaaagatata 280  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||| |||||||    
T  11643356 agtgcattgtgattgactgctctttattcttgatgttatttttctagagatata 11643303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 11653712 - 11653793
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||| | ||  ||||||||||| |||||||||||||||    
T  11653712 aaaatgctatttctctacaaaaataacatcaagaattttttaagacacggctgacaagttttaattacatgatttatttgtt 11653793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 37919507 - 37919588
Alignment:
Q  100 gggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttattt 181  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||  ||||||||||||| | ||||||||    
T  37919507 gggaaaatgctatttctctagaaaaatagtatcaagaatttatcaaaacacagttgacaagttttaattgcgtaatttattt 37919588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 34392299 - 34392154
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||| || ||||||||||  | |         |||||||||||||||||||||||||| |||| |||  |||||||    
T  34392299 ggaaaatgctatttctctaaaaaaatagaattaagaattttttcaaa---------taagttttaattgcatgatttatttg-ttcacttttcatttttc 34392210  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||  ||||||| ||| ||||||| |||||||||||| |||||||||||    
T  34392209 agccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttatt 34392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 4824342 - 4824296
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaaga 147  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  4824342 ggaaaatgctatttctctagaaaaatagcattaagaatttttcaaga 4824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 1005792 - 1005635
Alignment:
Q  101 ggaaaatgctatttctctataaaaa--tagcatcaagaatttttcaagacacagt-tggtaagttttaattgcatgatttatttgtttcattttctattt 197  Q
    ||||||||||||||||||| |||||  ||||||||| | ||||| ||| ||||   ||  ||||||||||||||| ||||||||| |||| || ||||||    
T  1005792 ggaaaatgctatttctctaaaaaaaaatagcatcaaaatttttttaaggcacaaactgacaagttttaattgcataatttatttg-ttcacttcctattt 1005694  T
Q  198 ttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||  | | ||||||||||| ||  |||| ||||||| | ||||| | |||||||||    
T  1005693 ttcagtcacacctctttaaattgtgtcaaatggtgcattataattgattactctttatt 1005635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 8551625 - 8551535
Alignment:
Q  165 aattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||| |||||||||||||| | | | ||||| || |||| ||| ||| | |||||||||||||  || ||||||||    
T  8551625 aattgcatgatttatttgtt-cattttctattttttaaccacatctcctttaattgtggcaaacaatgcattgtgattggttgttctttatt 8551535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 34392112 - 34392154
Alignment:
Q  105 aatgctatttctctataaaaatagcatcaagaatttttcaaga 147  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaaga 34392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 13357629 - 13357666
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaat 138  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  13357629 ggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 1196536 - 1196504
Alignment:
Q  260 tgttatttttctaaagatatagcattgctcata 292  Q
    ||||||||||||| |||||||||||||||||||    
T  1196536 tgttatttttctagagatatagcattgctcata 1196504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 13686193 - 13686039
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||| || |||||||||    
T  13686193 ggaaaatgctatttctctagaaaaatagcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttg-ttcacttcctatttttc 13686095  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| || |||||||||||||||| ||||||||||||    
T  13686094 agccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttatt 13686039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 25415113 - 25414959
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||| |||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| ||||||    
T  25415113 ggaaaatgctatatctctagaaaaatagtataaagaatttttcaagacacagctgataagttttaattgcatgatttatttg-ttcactttctttttttc 25415015  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||||||||||||||||||||||| ||||||||    
T  25415014 agccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttatt 25414959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 14940986 - 14941141
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||||| |||| ||  ||||||||    
T  14940986 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttg-ttcacttcttatttttc 14941084  T
Q  201 -agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
     ||  | | |||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  14941085 gagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttatt 14941141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 19899118 - 19898965
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||| |||| || ||| ||||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttg-ttcacttcctaattttca 19899020  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    || | | ||| || |||| ||  ||||| ||||||||||||| ||||||||||||    
T  19899019 gcaatacctccttgaattgtgacaaataatgcattgtgattggctgctctttatt 19898965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 41464902 - 41465037
Alignment:
Q  105 aatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagct 204  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||| |     
T  41464902 aatgttatttctctagaaaaataacatcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttg-ttcactttctatttttcaacc 41465000  T
Q  205 aaatctctttaaattatggtaaatagtgcattgtgat 241  Q
    | | ||| || ||||  || |||||||||||||||||    
T  41465001 acacctccttgaattgcggcaaatagtgcattgtgat 41465037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 45093148 - 45093289
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||| |||||||| || |||||||||||||||||| |||||| | || |||||||||    
T  45093148 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgttt-acttcctatttttc 45093246  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattg 243  Q
    ||  | | ||| || |||| ||| |||||||||||||||||||    
T  45093247 agtcatacctccttgaattgtggcaaatagtgcattgtgattg 45093289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 28429478 - 28429327
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||||| || |||||||||||||||||||||||| |||||   ||  ||||||||||||||||||||||||| |||| ||  ||||||||    
T  28429478 ggaaaatgctatttctttagaaaaatagcatcaagaatttttcatgacac---tgacaagttttaattgcatgatttatttg-ttcacttcttatttttc 28429383  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| ||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  28429382 agtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttatt 28429327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 35323473 - 35323628
Alignment:
Q  100 gggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctattttt 199  Q
    ||||||||| |||||||||| |||||||| || ||||||||||  |||||||||||  ||||||||||| |||||||||| || |||| ||| |||||||    
T  35323473 gggaaaatgttatttctctagaaaaatagtattaagaattttttcagacacagttgacaagttttaattacatgatttatatg-ttcagtttttattttt 35323571  T
Q  200 cagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||| | | ||| || |||| ||| |||||||| |||||||||||||| ||||||||    
T  35323572 cagccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttatt 35323628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 3810288 - 3810422
Alignment:
Q  121 aaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaatta 220  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||| ||  ||||||||||  | | ||| || ||||     
T  3810288 aaaaatagcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttg-ttcacttcttatttttcagtcacacctccttgaattg 3810386  T
Q  221 tggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| |||||||||||||| |||| || |||||||||    
T  3810387 tggcaaatagtgcattgtaattggctactctttatt 3810422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 28716315 - 28716417
Alignment:
Q  100 gggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctattttt 199  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||| |||| || ||||||||    
T  28716315 gggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttg-ttcacttcctattttt 28716413  T
Q  200 cagc 203  Q
    ||||    
T  28716414 cagc 28716417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 42264030 - 42263877
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||| |||||||||| |||||||||||||| | |||||||||||||    |  ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  42264030 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgtt-catttcctatttttca 42263932  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    || | | ||| || |||| ||  |||| |||||||||||||| ||||||||||||    
T  42263931 gccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttatt 42263877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 40126520 - 40126653
Alignment:
Q  122 aaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattat 221  Q
    ||||||||||| ||||||||| |||| |||| |   || ||||||||| |||||||||||||| || || |||||||||| ||| ||||  ||||||| |    
T  40126520 aaaatagcatcgagaattttttaagatacagctcacaaattttaattgtatgatttatttgtt-cacttcctatttttcaactatatcttcttaaattgt 40126618  T
Q  222 ggtaaatagtgcattgtgattgactgctctttatt 256  Q
    | ||||||||||||| ||| |||||||||||||||    
T  40126619 gataaatagtgcattatgaatgactgctctttatt 40126653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 35676270 - 35676430
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattg-------catgatttatttgtttcattttct 193  Q
    ||||||||||||||||||| |||||||||||||||| |||||  |||||||  ||| ||||||||||||       ||| ||||||||| |||| ||  |    
T  35676270 ggaaaatgctatttctctagaaaaatagcatcaagattttttttagacacaactggcaagttttaattgttcacttcat-atttatttg-ttcacttcat 35676367  T
Q  194 atttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||  | | ||| || |||| ||| ||||||||||||||| ||||||||||||||||    
T  35676368 atttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttatt 35676430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 2752614 - 2752659
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaag 146  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaatttttcaag 2752659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 29689277 - 29689359
Alignment:
Q  159 agttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgatt 242  Q
    |||||||||||||||||||||| ||| || || |||||||||||  ||| ||| || |||||| | ||||||||||||||||||    
T  29689277 agttttaattgcatgatttattagtt-cacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgatt 29689359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 36690818 - 36690903
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaat--ttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    |||||||||||||||| || ||||||| ||| ||||||  |||||||||||||| ||  || |||||||| | |||||||||||||    
T  36690818 ggaaaatgctatttctttagaaaaataacattaagaatatttttcaagacacagctgacaaattttaattacttgatttatttgtt 36690903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 24413903 - 24413862
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaattttt 142  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataattttt 24413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 13686022 - 13685988
Alignment:
Q  260 tgttatttttctaaagatatagcattgctcataat 294  Q
    ||||||||||||| |||||||||||||||||||||    
T  13686022 tgttatttttctagagatatagcattgctcataat 13685988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 13685997 - 13686039
Alignment:
Q  105 aatgctatttctctataaaaatagcatcaagaatttttcaaga 147  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  13685997 aatgctatatctctagaaaaataacatcaagaatttttcaaga 13686039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 2752692 - 2752779
Alignment:
Q  161 ttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgct 249  Q
    ||||||||| ||||||||||| || || ||  ||||||||||  | ||||| || |||| ||| ||||||||||||||||||| |||||    
T  2752692 ttttaattgtatgatttatttatt-cacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattggctgct 2752779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 23454386 - 23454414
Alignment:
Q  228 tagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||||||||||||    
T  23454386 tagtgcattgtgattgactgctctttatt 23454414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 31032696 - 31032850
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||| ||||||||||||    
T  31032696 ggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttg-ttcactttctatttttc 31032794  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || || | ||| ||||||||||||||||||||||| ||||||||    
T  31032795 agccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttatt 31032850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 44714807 - 44714960
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| ||||| |||| |||||||| |||||||||||||||||| | |||||| |||||||||||| ||||||||||| ||| ||||| ||||||||    
T  44714807 ggaaaatgttatttttctagaaaaatagtatcaagaatttttcaagatatagttggcaagttttaattgtatgatttattt-ttttattttttatttttc 44714905  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttat 255  Q
    ||| | ||||| || |||| ||| ||||| |||||||||||||||||||||||||    
T  44714906 agccacatctcgttgaattgtggcaaataatgcattgtgattgactgctctttat 44714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 47550990 - 47550837
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||||||| |||||||| |    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaatttttcaagaaacagctggcaagttttaattgcatgatttatatg-ttcatttcctatttttta 47550892  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |  | | ||| ||||||| ||| |||||||||||||| |||  ||||||||||||    
T  47550891 gtcacacctccttaaattgtggcaaatagtgcattgtaatttgctgctctttatt 47550837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 16255054 - 16254900
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||  ||  |||||||| |||||||||||| |||| || ||||| |||    
T  16255054 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttg-ttcacttcctattattc 16254956  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| ||||||||||| ||||||||||||||||||| ||| ||||||||    
T  16254955 agccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttatt 16254900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 20809147 - 20808993
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||| || | ||| ||||||||||| |||| |||||| | |||| || ||| |||||    
T  20809147 ggaaaattttatttctctagaaaaatagcatcaagaatttttcaagatacgggtggcaagttttaattacatggtttattcg-ttcacttcctagttttc 20809049  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | ||||| || |||| ||| ||||| ||||||||||||||||||||||||||    
T  20809048 agccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttatt 20808993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 34476099 - 34475945
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||| || ||  ||||||||||||||||||| ||||| |||| || |||||||||    
T  34476099 ggaaaaggctatttctctagaaaaatagtatcaagaatttttcaagacaaagctgacaagttttaattgcatgattgatttg-ttcacttcctatttttc 34476001  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || ||||  || | ||||||||||||||||| ||||||||||||    
T  34476000 agccacacctccttgaattggggcagatagtgcattgtgattggctgctctttatt 34475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 29095530 - 29095675
Alignment:
Q  110 tatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatc 209  Q
    |||||||||| |||||||||||||| || ||||||||||| |||||  |||||||||||||||||| | |||| |||| || |||||||||||| | | |    
T  29095530 tatttctctagaaaaatagcatcaaaaaattttcaagacatagttgccaagttttaattgcatgatatctttg-ttcacttcctatttttcagccacacc 29095628  T
Q  210 tctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    || || |||| ||| ||||||||||||||||||| ||||||||||||    
T  29095629 tccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 29095675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 42480323 - 42480167
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttca--agacacagttggtaagttttaattgcatgatttatttgtttcattttctatttt 198  Q
    |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||   | ||||||||||||||| ||||||||  |||||||||||||||    
T  42480323 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagagacacagcatgcaagttttaattgcataatttattt-attcattttctatttt 42480225  T
Q  199 tcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||||| | | ||| || |||| ||||||||| | |||||| |||||||||| ||||||    
T  42480224 tcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttatt 42480167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 1270363 - 1270217
Alignment:
Q  109 ctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaat 208  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||| |||||||||  |||| || |||||||||||| | |     
T  1270363 ctatttctctagaaaaatagcatcaaaaatttttcaagacacagttgacaagttttaattgcacgatttattt-attcacttcctatttttcagccacac 1270265  T
Q  209 ctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  || |||| ||| ||||||||||||| |||||  |||||||||||    
T  1270264 cttcttgaattgtggcaaatagtgcattgagattggttgctctttatt 1270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 9098571 - 9098651
Alignment:
Q  104 aaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||||||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgtt 9098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 34808134 - 34807979
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcag 202  Q
    |||||| ||||||| || ||||||||||| |    |||||||||| |||  | | |||||||||||||||||||||||| || || ||  ||||||||||    
T  34808134 aaaatgttatttctttagaaaaatagcataatttttttttcaagagacaactagcaagttttaattgcatgatttatttatt-cacttcatatttttcag 34808036  T
Q  203 ctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttattttt 259  Q
    | | | ||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  34808035 ccacacctccttaaattatgataaatagtacattgtgattgactgctctttattttt 34807979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 41647424 - 41647356
Alignment:
Q  104 aaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcat 172  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcat 41647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 4624538 - 4624444
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |       ||||||||||||||||||||||||| |||| || |||||||||    
T  4624538 ggaaaatgctatttctctagaaaaatagcatcaagaattattcaagactc-------aagttttaattgcatgatttatttg-ttcacttcctatttttc 4624447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 2958710 - 2958831
Alignment:
Q  116 tctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctcttta 215  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |     ||||||||||||||||||||| || |  |||||||||||| | | ||| ||     
T  2958710 tctagaaaaataacatcaagaatttttcaagacacagctggca-----taattgcatgatttatttgtt-cactccctatttttcagccacacctccttg 2958803  T
Q  216 aattatggtaaatagtgcattgtgattg 243  Q
    |||| ||| |||||||||||||||||||    
T  2958804 aattttggcaaatagtgcattgtgattg 2958831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 45010399 - 45010316
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    |||| ||| |||||||||| ||||||||||| ||||||||||||| |||||  ||  || ||||||||||||||||||||||||    
T  45010399 ggaagatgttatttctctagaaaaatagcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgtt 45010316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 4194876 - 4194812
Alignment:
Q  192 ctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||  | |||||||| ||||||||||||||||  |||||||||||||| ||||||||    
T  4194876 ctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgttctttatt 4194812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 24135893 - 24135801
Alignment:
Q  161 ttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||||| |||| || |||||||||||| | | ||| || |||| ||| ||||  ||||||||||||| ||||||||||||    
T  24135893 ttttaattgcatgatttatttg-ttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttatt 24135801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 41646652 - 41646621
Alignment:
Q  225 aaatagtgcattgtgattgactgctctttatt 256  Q
    ||||||||||||||||||||||||||||||||    
T  41646652 aaatagtgcattgtgattgactgctctttatt 41646621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 20808976 - 20808944
Alignment:
Q  260 tgttatttttctaaagatatagcattgctcata 292  Q
    ||||||||||||| |||||||||||||||||||    
T  20808976 tgttatttttctagagatatagcattgctcata 20808944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 7646773 - 7646930
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaatttttcaagacacatctggcaagttttaattgcatgatttatttg-ttcatttcctatttttc 7646871  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttattttt 259  Q
    ||  | |  || || |||| ||| ||||||||||||||||||| |||||||||||||||    
T  7646872 agtcacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttattttt 7646930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 25935694 - 25935554
Alignment:
Q  115 ctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctcttt 214  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| || ||||| ||||||||||||||| | | ||| ||    
T  25935694 ctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattacatgattta-ttctttcactttctatttttcagccacacctcctt 25935596  T
Q  215 aaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||||| ||  ||||||| |||| |||||   |||||||||||    
T  25935595 aaattgtgacaaatagtacattatgattagatgctctttatt 25935554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 29487541 - 29487668
Alignment:
Q  128 gcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaa 227  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||| |  |||||||||||| | | ||| || |||| ||| |||    
T  29487541 gcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttg-ttcactccctatttttcagccacacctcatttaattgtggcaaa 29487639  T
Q  228 tagtgcattgtgattgactgctctttatt 256  Q
    ||||||| ||||||||||| |||||||||    
T  29487640 tagtgcaatgtgattgactactctttatt 29487668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 12607123 - 12607213
Alignment:
Q  165 aattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||| || ||||||||||||||  | | ||| ||||||| ||| |||||||||| |||||||||||||||||||||    
T  12607123 aattgcatgatttatttgtt-cactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttatt 12607213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 12607030 - 12607107
Alignment:
Q  101 ggaaaatgctatttctctat-aaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgattt 177  Q
    |||||||| | ||||||||  |||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  12607030 ggaaaatgttgtttctctaggaaaaatagtatcaagaattttttaagacacaattgataagttttaattgcatgattt 12607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 17367016 - 17366939
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||     | ||||||||||||||||  |||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa-aatttttcaagacac-----gcaagttttaattgcatgcattatttgtt 17366939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 521754 - 521917
Alignment:
Q  92 taatatacgggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcatttt 191  Q
    |||||||  |||||||||||||| |||| | ||||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||| |||| ||     
T  521754 taatataatggaaaatgctatttatctagacaaatatcatcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttg-ttcacttc 521852  T
Q  192 ctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||| | | ||| || |||| ||| ||||||||||||||||||| ||||||||||||    
T  521853 ctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 521917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 50612873 - 50613027
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||  ||||||||||||||| ||||||||| |||| ||| ||||||||    
T  50612873 ggaaaatgttatttctctataaaaacagcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttg-ttcactttatatttttc 50612971  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| || |||| ||| ||||||||||||||||||| ||||||||||||    
T  50612972 agtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 50613027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 45166424 - 45166272
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcag 202  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||  || |  |||||||||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtc-cactccctatttttcag 45166326  T
Q  203 ctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    | |   ||| || |||| ||| ||||||||||||||||||| ||||||||||||    
T  45166325 ccacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 45166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 20912347 - 20912213
Alignment:
Q  121 aaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaatta 220  Q
    |||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||| |||| || |||||||||||  | | ||| ||||||||    
T  20912347 aaaaatagcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttg-ttcacttcctatttttcagtcacacctccttaaatta 20912249  T
Q  221 tggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  |||||||||||||| |||||||||||||||||    
T  20912248 tgacaaatagtgcattgttattgactgctctttatt 20912213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 31788505 - 31788351
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||||||| |||  ||||||||| |||| |||||||||| |||| || |||||||||    
T  31788505 ggaaaatgttatttctctataaaaataacttcaagaatttttcaagacacaattgacaagttttaactgcaagatttatttg-ttcacttcctatttttc 31788407  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |   | | ||| || |||| ||||||||||||||||||||||| ||||||||||||    
T  31788406 aatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttatt 31788351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 36517714 - 36517560
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||| |||| | ||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| || ||||||||     
T  36517714 ggaaaatgctatttatctagataaataacttcaagaatttttcaaaacacagttggcaagttttaattgcatgatttatttg-ttcacttcctatttttt 36517616  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |   | | ||| || |||| ||| ||||||||||||||||||||||||||||||||    
T  36517615 attcacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttatt 36517560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 39145451 - 39145297
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||| |||| ||||||| |||||||||    
T  39145451 ggaaaatgctatttctctagaaaaatagcatcaagaatttgtcaagacacagttgtcaagttttaattgtatgatttctttg-ttcatttcctatttttc 39145353  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| || |||| | | |||||||||||||| |||| ||||| ||||||    
T  39145352 agtcatacctcattgaattgtagcaaatagtgcattgtaattggctgctttttatt 39145297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 38176390 - 38176542
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcag 202  Q
    |||||| ||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||  ||||||||||    
T  38176390 aaaatgatatttctttagaaaaatagcattaagaatttttcaagacacagttggcaagttttaattgcatgttttatttg-ttcacttcatatttttcag 38176488  T
Q  203 ctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    | | | ||| || ||||  || ||||||||||||| ||||| ||||||||||||    
T  38176489 ccacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttatt 38176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 23642978 - 23643122
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||||||| ||| ||||||||| |||| || ||||||||     
T  23642978 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttg-ttcacttcctatttttt 23643076  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgact 246  Q
    ||  | | ||| || |||| ||| ||||||||||||||||||||||    
T  23643077 agtcacacctccttgaattgtggcaaatagtgcattgtgattgact 23643122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 51297022 - 51297177
Alignment:
Q  101 ggaaaatgctatttctctataaaaa-tagcatcaagaatttttcaagacaca-gttggtaagttttaattgcatgatttatttgtttcattttctatttt 198  Q
    |||||||| |||||||||| ||||| ||||||||| | ||||||||||| || |||| ||| |||||||||||||||||||||| |||| ||||||||||    
T  51297022 ggaaaatgttatttctctaaaaaaaatagcatcaaaattttttcaagacgcaagttgataaattttaattgcatgatttatttg-ttcactttctatttt 51297120  T
Q  199 tcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttat 255  Q
    ||||  | | || ||| |||| ||| ||||||||||||||| ||| ||| |||||||    
T  51297121 tcagtcatacctttttgaattgtggcaaatagtgcattgtggttggctgttctttat 51297177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 52546942 - 52546788
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||||  |   ||||||||||||||| ||||||||| ||||||| |||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttg-ttcatttcctatttttc 52546844  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |   | | ||| || |||| ||  ||||||  ||||||||||| ||||||||||||    
T  52546843 actcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttatt 52546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 34624486 - 34624629
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||| |           |||||||||||||||||||||||| || || |||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagaaa-----------ttttaattgcatgatttatttgtt-cacttcctatttttc 34624573  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | |  || | ||||| ||||||||||||||||||||||| ||||||||||||    
T  34624574 agccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttatt 34624629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 1561283 - 1561408
Alignment:
Q  130 atcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaata 229  Q
    |||||||||||||  |||||||| ||  |||||| |||||||||||||||||| |||| || |||||||||||| | | ||| || |||| ||| |||||    
T  1561283 atcaagaattttttcagacacagctgacaagtttcaattgcatgatttatttg-ttcacttcctatttttcagccacacctccttgaattgtggcaaata 1561381  T
Q  230 gtgcattgtgattgactgctctttatt 256  Q
    ||||||||||||||  |||||||||||    
T  1561382 gtgcattgtgattggttgctctttatt 1561408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 4391844 - 4391998
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||| || |||||||||    
T  4391844 ggaaaatgcaatttctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttg-ttcacttcctatttttc 4391942  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||| |||||||||| |||| ||||||||||||    
T  4391943 agccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttatt 4391998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 5481552 - 5481414
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||| ||| ||||||||    
T  5481552 ggaaaatattatttctctagaaaaatagcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttg-ttcactttttatttttc 5481454  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtga 240  Q
    ||| | |||||| | |||| ||| ||||| ||||||||||    
T  5481453 agccacatctctatgaattgtggcaaataatgcattgtga 5481414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 32891374 - 32891220
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||| |||| || |||| |||     
T  32891374 ggaaaatgctatttatctagaaaaatagcatcaacaatttttcaagacacagttgacaaattttaattgcatgatttatttg-ttcacttcctatctttt 32891276  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||||||||||||||||||| ||||| ||||||    
T  32891275 agccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttatt 32891220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 37093912 - 37094064
Alignment:
Q  103 aaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcag 202  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||| || |||||||||||    
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttg-ttcacttcctatttttcag 37094010  T
Q  203 ctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
      | | ||| || |||| | | ||||||| || |||||||||||||||||||||    
T  37094011 tcacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttatt 37094064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 3456949 - 3456798
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||| |||| ||||||||||||||||||||||   ||||||   |  ||||||||||||||||||||||||||| || || |||||||||    
T  3456949 ggaaaatgctatttttctagaaaaatagcatcaagaattttt---gacacaaccgacaagttttaattgcatgatttatttgtt-cacttcctatttttc 3456854  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| || |||| ||| |||||||||||||||| |||||||||||||||    
T  3456853 agtcacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttatt 3456798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 28434374 - 28434244
Alignment:
Q  128 gcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaa 227  Q
    |||||||||||||||  ||| |||||| |  ||||||||||||||||||||||| || ||||||||||||| |||  | ||||  ||||||| |||||||    
T  28434374 gcatcaagaatttttttagatacagttagcgagttttaattgcatgatttatttatt-cattttctattttacagtcacatcttcttaaattgtggtaaa 28434276  T
Q  228 tagtgcattgtgattgactgctctttattttt 259  Q
    ||||||||||| |||| |||||||||||||||    
T  28434275 tagtgcattgtaattggctgctctttattttt 28434244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 34286793 - 34286646
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| |||||||||||||| | ||||||||||||||  ||  || |||||||||||||||||||||| ||||||| |||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattttttcaagacacaactgacaaattttaattgcatgatttatttg-ttcatttcctatttttc 34286695  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgct 249  Q
    ||| | | ||   | |||| ||| ||||||||||| ||||||| |||||    
T  34286694 agccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct 34286646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 228223 - 228069
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||||||||| |||| ||||||| ||| || | ||||||||||||||  |   |||||||||||||||||| |||||||| || |||||| |||||    
T  228223 ggaaaatgctatttttctagaaaaataacattaaaattttttcaagacacaacttacaagttttaattgcatgatatatttgtt-cactttctacttttc 228125  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||  | | ||| || |||| |||||||||||||||||||||||| || ||||||||    
T  228124 agtcacacctccttgaattgtggtaaatagtgcattgtgattgattgttctttatt 228069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 8692708 - 8692610
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||  || |||||||||||||||||||||  |||| ||||||||||||    
T  8692708 ggaaaatgttatttctctaaaaaaatagcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttattt-attcactttctatttttc 8692610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 35672345 - 35672462
Alignment:
Q  137 atttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcatt 236  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||| |||| || ||||| || | | | || || |||||||  | |||||||||||||    
T  35672345 atttttgaagacacagttgataaattttaattgcatgatttatttg-ttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcatt 35672442  T
Q  237 gtgattgactgctctttatt 256  Q
    ||||||||||||||||||||    
T  35672443 gtgattgactgctctttatt 35672462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 42149030 - 42148957
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatga 174  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||||||||  || ||| ||||||||||||||    
T  42149030 ggaaaacgctatttctctagaaaaatagtatcaagaatttttcaagacacaactgataaattttaattgcatga 42148957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 38614231 - 38614333
Alignment:
Q  153 ttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctt 252  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||| | ||||  || |||| ||| || ||||||||||||||||   ||||||    
T  38614231 ttggtaagttttaattgcatgatttatttgttt-acttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgggcgctctt 38614329  T
Q  253 tatt 256  Q
    ||||    
T  38614330 tatt 38614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 40926015 - 40925934
Alignment:
Q  121 aaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagc 203  Q
    |||| ||||||||||||||||||||||||||  ||  |||||||||||| |||||||||||| |||| || ||||||||||||    
T  40926015 aaaagtagcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttg-ttcacttcctatttttcagc 40925934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 31644808 - 31644727
Alignment:
Q  121 aaaaatagcatcaagaatttttcaagacacag--ttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    |||||||| |||||||||||| |||||||||   ||||||||||||||||||||| |||||||| |||| || ||||||||||    
T  31644808 aaaaatagtatcaagaattttgcaagacacacaattggtaagttttaattgcatggtttatttg-ttcacttcctatttttca 31644727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 29223606 - 29223513
Alignment:
Q  158 aagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctt 252  Q
    ||||||||||||||||||||||||||  || ||  ||||||||||  | | ||| || |||| ||| ||||||||||||||| ||||||||||||    
T  29223606 aagttttaattgcatgatttatttgta-cacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctt 29223513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 43141519 - 43141563
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaa 145  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  43141519 ggaaaatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 31644718 - 31644684
Alignment:
Q  222 ggtaaatagtgcattgtgattgactgctctttatt 256  Q
    |||||||||||||||||||||| ||||||||||||    
T  31644718 ggtaaatagtgcattgtgattggctgctctttatt 31644684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 6614289 - 6614345
Alignment:
Q  145 agacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcag 202  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| || |||||||||||    
T  6614289 agacacagtcgacaagttttaattgcatgatttatttg-ttcacttcctatttttcag 6614345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 42148944 - 42148869
Alignment:
Q  216 aattatggtaaatagtgcattgtgattgactgctctttattttt--tgttatttttctaaagatatagcattgctc 289  Q
    |||||||  ||||||| |||||||||||| |||| |||||| ||  | ||||||||||| ||||||| ||||||||    
T  42148944 aattatgtcaaatagtacattgtgattgagtgctatttattcttgatattatttttctagagatataacattgctc 42148869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 23991949 - 23992103
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||  ||  |||||||||||||||||| | |||| |||| ||||||||||||    
T  23991949 ggaaaatgctatttctctagaaacatagtatcaagaatttttcaagacacaactgacaagttttaattgcatgatatttttg-ttcactttctatttttc 23992047  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    ||| | | ||| || |||| ||| ||||||||||||||||| | ||||||||||||    
T  23992048 agccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttatt 23992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 27425773 - 27425906
Alignment:
Q  122 aaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattat 221  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||| | | | ||| || |||| |    
T  27425773 aaaatagcatcaacaatttttcaagacacagttggcaagttttaattgcatgatttatttg-ttcacttcctatttttcaaccacaactccttgaattgt 27425871  T
Q  222 ggtaaatagtgcattgtgattgactgctctttatt 256  Q
    || ||||| ||||||||||||||||| ||||||||    
T  27425872 ggcaaataatgcattgtgattgactgttctttatt 27425906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 42195577 - 42195390
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttc 200  Q
    |||||||| |||||||||| ||||||| |||||||||||||| |||| |||  |   ||||||||||||||||||||||||||| || |   ||||||||    
T  42195577 ggaaaatgttatttctctagaaaaataacatcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgtt-cactccttatttttc 42195479  T
Q  201 agctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttat--tttttgttatttttctaaagatatagcattgc 287  Q
    ||  | | ||| || |||| ||||||||||||||||| |||| ||||||||| ||  ||  | ||||||||||| ||||||| ||||||    
T  42195478 agacacacctccttgaattgtggtaaatagtgcattgagattaactgctcttaatccttgattttatttttctagagatataacattgc 42195390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 22327002 - 22326907
Alignment:
Q  157 taagttttaattgcatgatttatttgtttcattttctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctcttt 253  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  | | |||  | |||| ||| ||||||| ||||||||||||| |||||||    
T  22327002 taagttttaattgcatgatttatttg-ttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctcttt 22326907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 8307723 - 8307639
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaa-tttttcaagacacagttggtaagttttaattgcatgatttatttgtt 184  Q
    |||||||| |||||||| | |||||||||||| | || ||||||||||||||  ||| || |||||| |||||||||||||||||    
T  8307723 ggaaaatgatatttctcaagaaaaatagcatcgacaaatttttcaagacacaactggcaaattttaactgcatgatttatttgtt 8307639  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 25686475 - 25686376
Alignment:
Q  192 ctatttttcagctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttattttt--tgtta-tttttctaaagatatagcattgct 288  Q
    ||||||| |||| | | ||| ||||||| ||||||||||| |||| ||||||| || |||||||| ||  ||||| ||||| || |||||||||||||||    
T  25686475 ctattttccagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttgatgttattttttttagagatatagcattgct 25686376  T

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Target: scaffold0002 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 492865 - 492712
Alignment:
Q  102 gaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaattgcatgatttatttgtttcattttctatttttca 201  Q
    ||||||| |||||||||| |||||||||||||| | |||||||||||||    |  ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  492865 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgtt-catttcctatttttca 492767  T
Q  202 gctaaatctctttaaattatggtaaatagtgcattgtgattgactgctctttatt 256  Q
    || | | ||| || |||| ||  |||| |||||||||||||| ||||||||||||    
T  492766 gccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttatt 492712  T

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Target: scaffold0339 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 13442 - 13378
Alignment:
Q  101 ggaaaatgctatttctctataaaaatagcatcaagaatttttcaagacacagttggtaagttttaa 166  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||    
T  13442 ggaaaatgatatttctctagaaaaatagcatcaagaa-ttttcaagacacagatggtaagttttaa 13378  T

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Target: scaffold0132 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 613 - 582
Alignment:
Q  225 aaatagtgcattgtgattgactgctctttatt 256  Q
    ||||||||||||||||||||||||||||||||    
T  613 aaatagtgcattgtgattgactgctctttatt 582  T

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Target: scaffold0132; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 8573 - 8542
Alignment:
Q  225 aaatagtgcattgtgattgactgctctttatt 256  Q
    ||||||||||||||||||||||||||||||||    
T  8573 aaatagtgcattgtgattgactgctctttatt 8542  T

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