View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17281_low_7 (Length: 330)
Name: NF17281_low_7
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_7 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0446 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 56069350 - 56069034
Alignment:
| Q |
18 |
ttgcaatccattatataatttattattctttttgtatacatggcttgcttcgtatcagtcatttttacaaacttagtaactcgatcagtactattttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
56069350 |
ttgcaatccattatataatttattattctttttgtatacatggcttgcttcgtatcagtcatttttacaaacttagtaactc----agtactattttatg |
56069255 |
T |
|
| Q |
118 |
cactgtgtgaacaatctcaaaagataacgttttctttgagtcttctaactattcattcatgtttgaaattaaaaccaattgaattgtaactataataata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
56069254 |
cactgtgtgaacaatctcaaaagataacgttttctttgagtcttctaactattcattcatgtttgaaattaaaaccaattgaattttaactata---ata |
56069158 |
T |
|
| Q |
218 |
aagatcaaggacatgatc--ataccacgtggaagcaataaaacagtttggtagcatatacttaactccagacaaac---------atcatccttgtctct |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56069157 |
aagatcaaggacatgatcatataccacgtggaagcaataaaacagtttggtagcatatacttaactccagacaaacacgaaccctatcatccttgtctct |
56069058 |
T |
|
| Q |
307 |
tctctacaatgtcatgtcatacac |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
56069057 |
tctctacaatgtcatgtcatacac |
56069034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 56072551 - 56072508
Alignment:
| Q |
173 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
56072551 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
56072508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 6819 - 6862
Alignment:
| Q |
173 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6819 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
6862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University