View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17281_low_9 (Length: 306)
Name: NF17281_low_9
Description: NF17281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17281_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 33998846 - 33998557
Alignment:
| Q |
17 |
acataatgtgcaagtagttcggtggtaagagtttgaccttgtaatttctaatttcacgagttagaattaaaattttatgaaacagttgtaaaatagtcat |
116 |
Q |
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| T |
33998846 |
acataatgtgcaagtagttcggtggtaagagtttgaccttgtaatttcaaatttcactagttagagttcaaattttatgaaacagttgtaaaatagtcat |
33998747 |
T |
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| Q |
117 |
taatgtcattttaattaatagtaatttctcattttactaatattttatgttacttaacatggtttattattgttgttttcaatggatttagatattctca |
216 |
Q |
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| T |
33998746 |
taatgtcactttaattaatagtaatttctcattttactaatattttatgttacttaacatggtttattattgttgttttcaatggatttggatattccca |
33998647 |
T |
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| Q |
217 |
ttgttgagttagagattttgacccatttttccactgttgctgagtgatcaattagtttttatatattttgaatgagtttgttatttgaat |
306 |
Q |
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| T |
33998646 |
ttgttgagttagagattttgacccatttttccactgttgctgagtgatgaattaggttttatatattttgaatgagtttgttatttgaat |
33998557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 8744485 - 8744524
Alignment:
| Q |
105 |
taaaatagtcattaatgtcattttaattaatagtaatttc |
144 |
Q |
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| T |
8744485 |
taaaatagtcattaatgtcattttaattaatattaatttc |
8744524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 22610370 - 22610323
Alignment:
| Q |
97 |
aacagttgtaaaatagtcattaatgtcattttaattaatagtaatttc |
144 |
Q |
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| T |
22610370 |
aacagttgtaaaataatcgttaatgtcaatttaattaataataatttc |
22610323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 48727580 - 48727624
Alignment:
| Q |
101 |
gttgtaaaatagtcattaatgtcattttaattaatagtaatttct |
145 |
Q |
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| T |
48727580 |
gttgtaaaatagtcattaatgtcactttagttcataataatttct |
48727624 |
T |
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