View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17282_high_1 (Length: 787)
Name: NF17282_high_1
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 598
Target Start/End: Original strand, 5229605 - 5230181
Alignment:
| Q |
15 |
cacagagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccagcaaagatgttaatttttcaagtcttgtcttaactcttaactacca |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5229605 |
cacaaagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccacaaaagatgttaatctttcaagtcttgtcttaactcttaactacca |
5229704 |
T |
|
| Q |
115 |
tcattggcatagtttaatcacaactaatgaaccaaacatatatactatatatgctttaacttcactcctactcnnnnnnnnnnnnnnnnnnnntcattaa |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5229705 |
tcattggcatagtttaatcacaaccaatgaaccaaacatatatactatatatgctttaacttcactcctactcaaaaaataaaaaaataaaa-tcattaa |
5229803 |
T |
|
| Q |
215 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5229804 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
5229903 |
T |
|
| Q |
315 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttcttttctctatagttttgtatgctgagaggctcag |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
5229904 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttctcttctctatagttttgtttgctgagaggctcag |
5230003 |
T |
|
| Q |
415 |
tttcatttcttccacttctattttcaagttcaaaacatgccctagaaagcacatcaaatcaaaatctagtaagttactttactccattctttttatgtca |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5230004 |
tttcatttcttccacttctattttcaagttcaaaacatgccctagaaagcacatcaaatcaaaatctagtaagttactttactccattctttttatgtca |
5230103 |
T |
|
| Q |
515 |
gtttcaaagtttagtacaatattatctattgttctatcaataataataaccttaattattatttattggaaagtgaaacatgtt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5230104 |
gtttcaaagtttagtacaatattatctattgttctatc---aataataacctta---attatttattggaaagtgaaacatgtt |
5230181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 633 - 773
Target Start/End: Original strand, 5230216 - 5230356
Alignment:
| Q |
633 |
gcagaaaaacgaatgatttcatcaaaaataacaaaacttgttcgnnnnnnnaatatgtgtaaataaccttaatacgtagattaaaaaagaggggagtgcg |
732 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5230216 |
gcagaaaaatgaataatttcttcaaaaataacaaaacttgttcgttttcttaatatgtgtaaataaccttaaaacgtagattaaaaaagaggggagtgcg |
5230315 |
T |
|
| Q |
733 |
taattagcttcgcaaatgcaccaaaactatctcatcatatt |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5230316 |
taattagcttcgcaaatgcaccaaaactatctcatcatatt |
5230356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 25337764 - 25337834
Alignment:
| Q |
392 |
gttttgtatgctgagaggctcagtttcatttcttccacttctattttcaagttcaaaacatgccctagaaa |
462 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||| | || ||||||||||||||| | ||||||||||| |
|
|
| T |
25337764 |
gttttgtatgcagagagactcagttttctttcttctaagtccattttcaagttcaaaccttgccctagaaa |
25337834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University