View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_10 (Length: 461)
Name: NF17282_high_10
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 27958506 - 27958937
Alignment:
| Q |
20 |
ccctcttcaaatatcgattcgtaacttattataacttaatatacaggtctatctatttttctcgataaaaataatggaagatatacaactttattcgatc |
119 |
Q |
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| T |
27958506 |
ccctcttcaaatatcgattcgtaacttattataacttaatatacacgtctatctatttttctcgataaaaataatggaagaaatacaactttattcaatc |
27958605 |
T |
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| Q |
120 |
atctaaaaaagagtagttatttgattgggtagagagagcaagattagttattcgannnnnnnnaagctaaaaatttggtgagaccaaaatttggtatctc |
219 |
Q |
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| T |
27958606 |
atctaaaaaagagtagttatttgattgggtagagagagcaagattagttattcgattttttttaagctaaaaattttgtgagaccaaaatttggtatctc |
27958705 |
T |
|
| Q |
220 |
ctttatatataattagcgaaaagacggacactctccgatggttaaaaatttgcattgctttaaccaaattatgtggtctcatgaatttaatgggatgtga |
319 |
Q |
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| T |
27958706 |
ctttatatataattagcgaaaagatggacactcttcgatggttaaaa-tttacattgcttcaaccaaattatgtggtctcatgaatttaatgggatgtga |
27958804 |
T |
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| Q |
320 |
atttttggattagaaagtgtgtgtcaatctcttacttaactagaaaccaaattatatgtcatttttgtttgtttttactattattattttcttcatcatg |
419 |
Q |
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| T |
27958805 |
atttttgggttagaaagtgtgtgtcaatctcttacttaactagaaaccaaattatatgtcatttttgtttgtttttactattattattttcttcatcatg |
27958904 |
T |
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| Q |
420 |
taatgatattgatacatatgtgaccagaattat |
452 |
Q |
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| T |
27958905 |
taatgatattgatacatatgtgaccaaaattat |
27958937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 12017245 - 12017171
Alignment:
| Q |
76 |
ttttctcgataaaaataatggaagatatacaactttattcgatcatctaaaaaagagtagttatttgattgggta |
150 |
Q |
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| T |
12017245 |
ttttctcgataaaaataatggaagttatacaattttacgtgattatttaataaaaaacagttatttgattgggta |
12017171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 21305217 - 21305249
Alignment:
| Q |
220 |
ctttatatataattagcgaaaagacggacactc |
252 |
Q |
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| T |
21305217 |
ctttatatataattagcgaaaagacgggcactc |
21305249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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