View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_13 (Length: 452)
Name: NF17282_high_13
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 25036346 - 25036748
Alignment:
| Q |
13 |
gaacaaaaacataaacgggaggttataacaatccctataaaagccccatgaaagctctattaaaattgttggaaaaggaaccctagaaaaggtgtgatat |
112 |
Q |
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| T |
25036346 |
gaacaaaaacataaacgggaggttataacaatccctataaaagccccatgaaagctctattaaaattgttggaaaaggacccctagaacaggtgtgatat |
25036445 |
T |
|
| Q |
113 |
gtcctgtctttattaaaattgtttttgaacaaaaacccgatttaattacttatgtaatttcgttcttgaattggttgttaacgaattagagatccttgtg |
212 |
Q |
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| T |
25036446 |
gtcctgtctttattaaaattgtttttgaacaaaaaccccatttaattactta-gtaatttcgttcttgaattggttgttaacgaattaaagatccttgtg |
25036544 |
T |
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| Q |
213 |
agatgatcaatgttaattatcttgtaatatattttcaaaattactttgaccgcacatgacaacgataactcaacttccctaacaaaaaagaaatgtgcca |
312 |
Q |
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| T |
25036545 |
agatgatcaatgttaattatcttgtaatatattttcaaaattactttgaccgcacacgacaacgataactcaacttccctaacaaaaaagaaatg----- |
25036639 |
T |
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| Q |
313 |
attggctta--atcctaattaagaaaaacatgaatccattaggcttaacatcttatggatttgtgaatatcaaaagtatttagtttccatgcgtcttaat |
410 |
Q |
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| T |
25036640 |
--tggcttaacatcc----taagaaaaacatgaatccattaggctta----------ga-ttgtgaatatcaaaagtatttagtttccatgtgtcttaat |
25036722 |
T |
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| Q |
411 |
ttcactcttgtttagaaagacttacc |
436 |
Q |
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| T |
25036723 |
ttcactcttgtttagaaagacttacc |
25036748 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 19009843 - 19009880
Alignment:
| Q |
174 |
gttcttgaattggttgttaacgaattagagatccttgt |
211 |
Q |
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| T |
19009843 |
gttcttgaattgattattaacgaattagagatccttgt |
19009880 |
T |
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