View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17282_high_15 (Length: 414)

Name: NF17282_high_15
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17282_high_15
NF17282_high_15
[»] chr8 (9 HSPs)
chr8 (11-414)||(16704073-16704476)
chr8 (379-414)||(19163568-19163603)
chr8 (378-414)||(8639903-8639939)
chr8 (382-414)||(10297638-10297670)
chr8 (374-414)||(12910838-12910878)
chr8 (378-414)||(13357473-13357509)
chr8 (374-414)||(21557422-21557462)
chr8 (378-414)||(33105384-33105420)
chr8 (378-414)||(44293568-44293604)
[»] chr2 (14 HSPs)
chr2 (379-414)||(4122045-4122080)
chr2 (379-414)||(16877118-16877153)
chr2 (379-414)||(16989249-16989284)
chr2 (375-414)||(44526118-44526157)
chr2 (378-414)||(9383241-9383277)
chr2 (379-414)||(1861841-1861876)
chr2 (379-413)||(22523045-22523079)
chr2 (380-414)||(36648822-36648856)
chr2 (376-414)||(41187489-41187527)
chr2 (380-413)||(32513669-32513702)
chr2 (378-414)||(2256964-2257000)
chr2 (378-414)||(9842234-9842270)
chr2 (379-411)||(20017091-20017123)
chr2 (378-414)||(35820333-35820369)
[»] chr5 (8 HSPs)
chr5 (364-414)||(10704363-10704413)
chr5 (379-414)||(10199013-10199048)
chr5 (379-414)||(28207126-28207161)
chr5 (379-414)||(37932324-37932359)
chr5 (380-414)||(20175720-20175754)
chr5 (372-414)||(32283566-32283608)
chr5 (377-414)||(24485691-24485728)
chr5 (377-414)||(33133631-33133668)
[»] chr7 (13 HSPs)
chr7 (378-414)||(5526718-5526754)
chr7 (378-414)||(10244720-10244756)
chr7 (378-414)||(39801699-39801735)
chr7 (379-414)||(19416508-19416543)
chr7 (379-414)||(20243249-20243284)
chr7 (379-414)||(31038554-31038589)
chr7 (379-414)||(38728202-38728237)
chr7 (379-414)||(48980481-48980516)
chr7 (379-412)||(32228433-32228466)
chr7 (378-414)||(580958-580994)
chr7 (377-413)||(5352321-5352357)
chr7 (378-414)||(21993175-21993211)
chr7 (378-414)||(49063790-49063826)
[»] chr1 (13 HSPs)
chr1 (378-414)||(17280116-17280152)
chr1 (379-414)||(24752680-24752715)
chr1 (379-414)||(42045404-42045439)
chr1 (380-414)||(2613717-2613751)
chr1 (376-414)||(34632160-34632198)
chr1 (377-414)||(25086475-25086512)
chr1 (378-414)||(15602209-15602245)
chr1 (378-414)||(17139549-17139585)
chr1 (370-414)||(21400055-21400099)
chr1 (378-414)||(25532966-25533002)
chr1 (379-411)||(40268204-40268236)
chr1 (378-414)||(42888568-42888604)
chr1 (379-411)||(51831268-51831300)
[»] scaffold0040 (1 HSPs)
scaffold0040 (379-414)||(56778-56813)
[»] scaffold0011 (2 HSPs)
scaffold0011 (379-414)||(185257-185292)
scaffold0011 (378-413)||(223151-223186)
[»] chr6 (6 HSPs)
chr6 (379-414)||(4494903-4494938)
chr6 (383-414)||(21778728-21778759)
chr6 (379-414)||(32053782-32053817)
chr6 (380-414)||(17382079-17382113)
chr6 (380-414)||(20744133-20744167)
chr6 (378-414)||(13376305-13376341)
[»] chr4 (7 HSPs)
chr4 (379-414)||(2186365-2186400)
chr4 (379-414)||(9946421-9946456)
chr4 (377-412)||(23809941-23809976)
chr4 (379-414)||(52270062-52270097)
chr4 (377-414)||(9539225-9539262)
chr4 (378-414)||(12322666-12322702)
chr4 (378-414)||(39171402-39171438)
[»] chr3 (10 HSPs)
chr3 (379-414)||(10498727-10498762)
chr3 (379-414)||(21506790-21506825)
chr3 (379-414)||(39481135-39481170)
chr3 (379-414)||(44579630-44579665)
chr3 (380-414)||(25340956-25340990)
chr3 (379-413)||(47255753-47255787)
chr3 (377-414)||(29631178-29631215)
chr3 (382-414)||(14827522-14827554)
chr3 (378-414)||(18870757-18870793)
chr3 (382-414)||(47313404-47313436)
[»] scaffold0735 (1 HSPs)
scaffold0735 (378-414)||(1521-1557)
[»] scaffold0118 (1 HSPs)
scaffold0118 (382-414)||(39995-40027)
[»] scaffold0098 (1 HSPs)
scaffold0098 (374-414)||(5414-5454)


Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 16704073 - 16704476
Alignment:
Q  11 cacagaaaccgagtcagattcgtaaccgtgaactctcaagcgatatatacaggtgtgtgaaggacttccgtgatttgatgtaaaatcgaaccttattgtg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704073 cacagaaaccgagtcagattcgtaaccgtgaactctcaagcgatatatacaggtgtgtgaaggacttccgtgatttgatgtaaaatcgaaccttattgtg 16704172  T
Q  111 tcgataacaccataacctgctgaattcaacacgttgtaagtttgagcattgctcttctcaaggtcatatgtaaactctgtcaggagaaacatcttctcag 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704173 tcgataacaccataacctgctgaattcaacacgttgaaagtttgagcattgctcttctcaaggtcatatgtaaactctgtcaggagaaacatcttctcag 16704272  T
Q  211 tatcaattacagaattaggattgctcccctgcagccaaccggagatcctacagtccttgggagcactagatcgatcatatgcaacactctgttgaaagaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16704273 tatcaattacagaattaggattgctcccctgcagccaaccggagatcctacagtccttgggagcgctagatcgatcatatgcaacactctgttgaaagaa 16704372  T
Q  311 aaagtataagtacaaaaaccaacaatactcaaagaaatggtgaatgaatgattaatagaaaagaaaaagtcctcgtgagcttagctcagctggtatggac 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704373 aaagtataagtacaaaaactaacaatactcaaagaaatggtgaatgaatgattaatagaaaagaaaaagtcctcgtgagcttagctcagctggtatggac 16704472  T
Q  411 aatg 414  Q
    ||||    
T  16704473 aatg 16704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 19163603 - 19163568
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19163603 gtcctcgtgagcttagctcagttggtatggacaatg 19163568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 8639903 - 8639939
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| | ||||||||||||    
T  8639903 agtcctcgtgagcttagctcagtttgtatggacaatg 8639939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 10297638 - 10297670
Alignment:
Q  382 ctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||| ||||||||||||||    
T  10297638 ctcgtgagcttagctcagttggtatggacaatg 10297670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 12910878 - 12910838
Alignment:
Q  374 aaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||| ||||| ||||||||| ||||||||||||||    
T  12910878 aaaaagtccttgtgagattagctcagttggtatggacaatg 12910838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 13357509 - 13357473
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  13357509 agtcctcgtgagcttaactcagttggtatggacaatg 13357473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 21557422 - 21557462
Alignment:
Q  374 aaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||| | ||||||||||||    
T  21557422 aaaaagtcctcgtgagcttaactcagttagtatggacaatg 21557462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 33105384 - 33105420
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||||| || ||||||    
T  33105384 agtcctcgtgagcttagctcagctggtttgaacaatg 33105420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 44293568 - 44293604
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| |||||| |||||||    
T  44293568 agtcctcgtgagcttagctcagttggtatagacaatg 44293604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 4122080 - 4122045
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  4122080 gtcctcgtgagcttagctcagctggtatggacaatg 4122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 16877118 - 16877153
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  16877118 gtcctcgtgagcttagctcagctggtatggacaatg 16877153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 16989249 - 16989284
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  16989249 gtcctcgtgagcttagctcagctggtatggacaatg 16989284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 44526118 - 44526157
Alignment:
Q  375 aaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  44526118 aaaagtcctcgtgagcttagctcagttggtatggacaatg 44526157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 9383277 - 9383241
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9383277 agtcctcgtgagcttagctcagttggtatggacaatg 9383241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 1861876 - 1861841
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||||| |||||||||||    
T  1861876 gtcctcgtgagcttagctcagctgatatggacaatg 1861841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 22523079 - 22523045
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaat 413  Q
    ||||||||||||||||||||| |||||||||||||    
T  22523079 gtcctcgtgagcttagctcagttggtatggacaat 22523045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 36648856 - 36648822
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  36648856 tcctcgtgagcttagctcagttggtatggacaatg 36648822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 41187527 - 41187489
Alignment:
Q  376 aaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  41187527 aaagtcctcgtgagcttagcttagttggtatggacaatg 41187489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 380 - 413
Target Start/End: Original strand, 32513669 - 32513702
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaat 413  Q
    |||||||||||||||||||| |||||||||||||    
T  32513669 tcctcgtgagcttagctcaggtggtatggacaat 32513702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 2256964 - 2257000
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  2256964 agtcctcgtgagcttaactcagttggtatggacaatg 2257000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 9842270 - 9842234
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  9842270 agtcctcgtgagcttagctcagttggtagggacaatg 9842234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 20017123 - 20017091
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggaca 411  Q
    ||||||||||||||||||||||||||| |||||    
T  20017123 gtcctcgtgagcttagctcagctggtaaggaca 20017091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 35820369 - 35820333
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  35820369 agtcctcgtgagcttagctcagttggtagggacaatg 35820333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 10704413 - 10704363
Alignment:
Q  364 aatagaaaagaaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||  |||||||||| ||||||||||||||| ||||||||||||||    
T  10704413 aatagaaacaaaaaagtccttgtgagcttagctcagttggtatggacaatg 10704363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 10199013 - 10199048
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10199013 gtcctcgtgagcttagctcagttggtatggacaatg 10199048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 28207126 - 28207161
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  28207126 gtcctcgtgagcttagctcagttggtatggacaatg 28207161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 37932324 - 37932359
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37932324 gtcctcgtgagcttagctcagttggtatggacaatg 37932359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 20175720 - 20175754
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  20175720 tcctcgtgagcttagctcagttggtatggacaatg 20175754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 32283566 - 32283608
Alignment:
Q  372 agaaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||| || |||||||||||||||||| ||||||||||||||    
T  32283566 agaaaatgttctcgtgagcttagctcagttggtatggacaatg 32283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 24485691 - 24485728
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| || ||||||||||||||    
T  24485691 aagtcctcgtgagcttagcttagttggtatggacaatg 24485728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 33133631 - 33133668
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  33133631 aagtcctcgtgagcttagctcagttggtagggacaatg 33133668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 5526718 - 5526754
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5526718 agtcctcgtgagcttagctcagttggtatggacaatg 5526754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 10244720 - 10244756
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10244720 agtcctcgtgagcttagctcagttggtatggacaatg 10244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 39801699 - 39801735
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||||||||||||    
T  39801699 agtcctcgtgagcttagctcagttggtatggacaatg 39801735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 19416508 - 19416543
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19416508 gtcctcgtgagcttagctcagttggtatggacaatg 19416543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 20243249 - 20243284
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20243249 gtcctcgtgagcttagctcagttggtatggacaatg 20243284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 31038589 - 31038554
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31038589 gtcctcgtgagcttagctcagttggtatggacaatg 31038554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 38728202 - 38728237
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38728202 gtcctcgtgagcttagctcagttggtatggacaatg 38728237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 48980481 - 48980516
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  48980481 gtcctcgtgagcttagctcagttggtatggacaatg 48980516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 32228433 - 32228466
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaa 412  Q
    ||||||||||||||| ||||||||||||||||||    
T  32228433 gtcctcgtgagcttaactcagctggtatggacaa 32228466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 580994 - 580958
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| | ||||||||||||||    
T  580994 agtcctcgtgagcttagctcggttggtatggacaatg 580958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 5352321 - 5352357
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaat 413  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  5352321 aagtcctcgtgagcttagctcagttggtaaggacaat 5352357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 21993175 - 21993211
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  21993175 agtcctcgtgagcttaactcagttggtatggacaatg 21993211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 49063826 - 49063790
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  49063826 agtcctcgtgagcttagctcagatggtacggacaatg 49063790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 17280152 - 17280116
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17280152 agtcctcgtgagcttagctcagttggtatggacaatg 17280116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 24752715 - 24752680
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24752715 gtcctcgtgagcttagctcagttggtatggacaatg 24752680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 42045439 - 42045404
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  42045439 gtcctcgtgagcttagctcagttggtatggacaatg 42045404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 2613717 - 2613751
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  2613717 tcctcgtgagcttagctcagttggtatggacaatg 2613751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 34632160 - 34632198
Alignment:
Q  376 aaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  34632160 aaagtcctcgtgagcttagctcagttggtatagacaatg 34632198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 25086475 - 25086512
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  25086475 aagtccttgtgagcttagctcagttggtatggacaatg 25086512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 15602245 - 15602209
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  15602245 agtcctcgtgagcatagctcagttggtatggacaatg 15602209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 17139585 - 17139549
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  17139585 agtcctcgtgagcttagctcagttggtagggacaatg 17139549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 21400099 - 21400055
Alignment:
Q  370 aaagaaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||| || ||||||||||||||||||||| ||||| ||||||||    
T  21400099 aaagataaggtcctcgtgagcttagctcagttggtagggacaatg 21400055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 25532966 - 25533002
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  25532966 agtcctcgtgagcttagttcagttggtatggacaatg 25533002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 40268204 - 40268236
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggaca 411  Q
    ||||||||||||||||||||| |||||||||||    
T  40268204 gtcctcgtgagcttagctcagttggtatggaca 40268236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 42888568 - 42888604
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  42888568 agtccacgtgagcttagctcagttggtatggacaatg 42888604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 51831268 - 51831300
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggaca 411  Q
    ||||||||||||||||||||| |||||||||||    
T  51831268 gtcctcgtgagcttagctcagttggtatggaca 51831300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 56778 - 56813
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  56778 gtcctcgtgagcttagctcagttggtatggacaatg 56813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 185257 - 185292
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  185257 gtcctcgtgagcttagctcagttggtatggacaatg 185292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 413
Target Start/End: Original strand, 223151 - 223186
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaat 413  Q
    |||||||||||||||||||||| |||||||||||||    
T  223151 agtcctcgtgagcttagctcagttggtatggacaat 223186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 4494938 - 4494903
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4494938 gtcctcgtgagcttagctcagttggtatggacaatg 4494903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 21778759 - 21778728
Alignment:
Q  383 tcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||||||||||||    
T  21778759 tcgtgagcttagctcagctggtatggacaatg 21778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 32053782 - 32053817
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32053782 gtcctcgtgagcttagctcagttggtatggacaatg 32053817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 17382079 - 17382113
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  17382079 tcctcgtgagcttagctcagttggtatggacaatg 17382113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 20744133 - 20744167
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  20744133 tcctcgtgagcttagctcagttggtatggacaatg 20744167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 13376305 - 13376341
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||  ||||||||||||||    
T  13376305 agtcctcgtgagcttagctcaattggtatggacaatg 13376341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 2186400 - 2186365
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2186400 gtcctcgtgagcttagctcagttggtatggacaatg 2186365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 9946421 - 9946456
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9946421 gtcctcgtgagcttagctcagttggtatggacaatg 9946456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 377 - 412
Target Start/End: Original strand, 23809941 - 23809976
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaa 412  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23809941 aagtcctcgtgagcttagctcagttggtatggacaa 23809976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 52270097 - 52270062
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  52270097 gtcctcgtgagcttagctcagttggtatggacaatg 52270062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 9539262 - 9539225
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||||| || |||||||||||    
T  9539262 aagtcctcgtgagcttagctcagttgttatggacaatg 9539225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 12322666 - 12322702
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  12322666 agtcctcgtgagcttagctcagttggtacggacaatg 12322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 39171438 - 39171402
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| || |||||||||||    
T  39171438 agtcctcgtgagcttagctcagttgatatggacaatg 39171402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 10498762 - 10498727
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10498762 gtcctcgtgagcttagctcagttggtatggacaatg 10498727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 21506825 - 21506790
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21506825 gtcctcgtgagcttagctcagttggtatggacaatg 21506790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 39481135 - 39481170
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39481135 gtcctcgtgagcttagctcagttggtatggacaatg 39481170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 44579630 - 44579665
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44579630 gtcctcgtgagcttagctcagttggtatggacaatg 44579665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 25340990 - 25340956
Alignment:
Q  380 tcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  25340990 tcctcgtgagcttagctcagttggtatggacaatg 25340956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 47255753 - 47255787
Alignment:
Q  379 gtcctcgtgagcttagctcagctggtatggacaat 413  Q
    ||||||||||||||||||||||||||||| |||||    
T  47255753 gtcctcgtgagcttagctcagctggtatgaacaat 47255787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 29631178 - 29631215
Alignment:
Q  377 aagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  29631178 aagtcctcatgagcttagctcagttggtatggacaatg 29631215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 14827522 - 14827554
Alignment:
Q  382 ctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||| ||||||||||||||    
T  14827522 ctcgtgagcttagctcagttggtatggacaatg 14827554  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 18870793 - 18870757
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  18870793 agtcctcgtgagcttagctcagttggtagggacaatg 18870757  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 47313436 - 47313404
Alignment:
Q  382 ctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||| ||||||||||||||    
T  47313436 ctcgtgagcttagctcagttggtatggacaatg 47313404  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 1521 - 1557
Alignment:
Q  378 agtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  1521 agtccacgtgagcttagctcagttggtatggacaatg 1557  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 39995 - 40027
Alignment:
Q  382 ctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||| ||||||||||||||    
T  39995 ctcgtgagcttagctcagttggtatggacaatg 40027  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 5414 - 5454
Alignment:
Q  374 aaaaagtcctcgtgagcttagctcagctggtatggacaatg 414  Q
    |||||||||||||||||||||||||| ||||| | ||||||    
T  5414 aaaaagtcctcgtgagcttagctcagttggtaagaacaatg 5454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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