View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_17 (Length: 354)
Name: NF17282_high_17
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 37 - 344
Target Start/End: Original strand, 41966192 - 41966498
Alignment:
| Q |
37 |
tcaagtatgtgtttgattatgcggtgnnnnnnnnttgactttgaattagttgattttgaaaaattggtttctactaaaaacgagttatgacttgaatcaa |
136 |
Q |
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| T |
41966192 |
tcaagtatgtgtttgattatgcggtgaaaaaaaattgaatttgaattagttgattttgtaaaattgttttttactaaaaatgagttatgacttgaatcaa |
41966291 |
T |
|
| Q |
137 |
tgtgaattgaagcaacaataaatttgatgttaaaattcaattgaagaagcaaaaactttaaattttgtgttctgagttataatcggttcttgaggtaaat |
236 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
41966292 |
tgtgaattgaagaaacaataaatttgatgttaaaattcaattgaagaagcaaaaactttaaattttgtgtt-tgagctataatcagttcttgaggtaaat |
41966390 |
T |
|
| Q |
237 |
tcaattatatgcaaacatatttaaatatatcaaaatcaattctacatcaattttgtcgtctccaaaagtgaaactaaatatacaccaactctattaactt |
336 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41966391 |
tcaattatacgcaaacatatttaaatatatcaaaattaattctacatcaattttgtcgtctctaaaagtgaaactaaatatacaccaactctattaactt |
41966490 |
T |
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| Q |
337 |
tatctctg |
344 |
Q |
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|||||||| |
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| T |
41966491 |
tatctctg |
41966498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 135 - 288
Target Start/End: Original strand, 1227680 - 1227832
Alignment:
| Q |
135 |
aatgtgaattgaagcaacaataaatttgatgttaaaattcaattgaagaagcaaaaactttaaattttgtgttctgagttataatcggttcttgaggtaa |
234 |
Q |
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|||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
1227680 |
aatgtgaattgaagtaacaataaatttgatgctaaaaatcaattgtagaagcaaaaactttaaattttgtcttc-gagttataatcggtttttgaggtaa |
1227778 |
T |
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| Q |
235 |
attcaattatatgcaaacatatttaaatatatcaaaatcaattctacatcaatt |
288 |
Q |
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| T |
1227779 |
attcaattatacgcgaacacatttaaatatatcaaaatcaattttacatcaatt |
1227832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 1227604 - 1227649
Alignment:
| Q |
71 |
ttgactttgaattagttgattttgaaaaattggtttctactaaaaa |
116 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |||||| |
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| T |
1227604 |
ttgattttgaattagttgattttgtaaaattggtttctattaaaaa |
1227649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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