View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_3 (Length: 688)
Name: NF17282_high_3
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 13 - 674
Target Start/End: Complemental strand, 50229435 - 50228775
Alignment:
| Q |
13 |
gcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggcnnnnnnnacaggttaacatggttgattgatgact |
112 |
Q |
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| T |
50229435 |
gcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggctttttttacaggttaacatggttgattgatgact |
50229336 |
T |
|
| Q |
113 |
ttggttacttaatctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatannnnnnnctcatttggtt |
212 |
Q |
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| T |
50229335 |
ttggttacttagtctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatatttttttctcatttggtt |
50229236 |
T |
|
| Q |
213 |
tggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacgtggagtggtgcct |
312 |
Q |
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| T |
50229235 |
tggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacatggagtggtgctt |
50229136 |
T |
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| Q |
313 |
gctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttggaatggcgttt |
412 |
Q |
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| T |
50229135 |
gctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttggaatggcgttt |
50229036 |
T |
|
| Q |
413 |
gtcggtggttgggtattgttttgtgaacccagttgacattggagagcatgctttacaattttgtggtgcttacttgtttagaaaggaattttgtatgtgt |
512 |
Q |
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| T |
50229035 |
gtcggtggttgggtattgttttgtgaacccagttgacattggagagcatgcttta-aattttgtggtgcttacttgtttagaaaggaattttgtatgtgt |
50228937 |
T |
|
| Q |
513 |
tttcaggcaatttggatgacatgtatttgaattatttggaaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatc |
612 |
Q |
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| T |
50228936 |
tttcaggcaatttggatgacatgtatttgaattatttggaaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatc |
50228837 |
T |
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| Q |
613 |
gtatcaaactccaatcatggtagtgtttgaacaatcatagattgatttttgttgtagatttt |
674 |
Q |
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| T |
50228836 |
gtatcaaactccaatcatggtagtgtttgaacaatcatagattgatttttgttgtagatttt |
50228775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 292 - 514
Target Start/End: Complemental strand, 39380885 - 39380661
Alignment:
| Q |
292 |
tttcaacgtggagtggtgcctgctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagttttta |
391 |
Q |
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| T |
39380885 |
tttcaccgtggagtgttgcctgatacttctttgttttgttcaggagggtgtgggaaggaggaaacaactaattgtctttaattaagatgtgatgttttta |
39380786 |
T |
|
| Q |
392 |
gtaatgtttggaatggcgtttgtcggtggttgggta-ttgttttgtgaacccagttgacattggagagcatgctttacaa-ttttgtggtgcttacttgt |
489 |
Q |
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| T |
39380785 |
gtaatgtttggaatggtgtttttcgatggttgggtatttgttttgagaatccaattgacaatggagagcttgctctacaatttttgtggtgcttatatgt |
39380686 |
T |
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| Q |
490 |
ttagaaaggaattttgtatgtgttt |
514 |
Q |
| |
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| T |
39380685 |
tcagaaagggaatttgtatgtgttt |
39380661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 628
Target Start/End: Complemental strand, 39380630 - 39380590
Alignment:
| Q |
589 |
aatctttcaa-gcagctattggatcgtatcaaactccaatc |
628 |
Q |
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| T |
39380630 |
aatctttcaaagcagctattggatcgtatcaaacttcaatc |
39380590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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