View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_5 (Length: 514)
Name: NF17282_high_5
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 3611547 - 3612031
Alignment:
| Q |
18 |
ggaatatcaacggttctgtttttgttcacaaccttaataaaattatagctttatgagctccatttattaccacatgtgtaccttattatataatctcttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
3611547 |
ggaatatcaacggttctgtttttgttcacaaccttaataaaattatagctttatgagctccatttattaccacatgtgtaccttatttta--atctcttt |
3611644 |
T |
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| Q |
118 |
tcatcatttttagatatattnnnnnnntagataatgttgtacctaaaaatgtattagataatgtgttttatgtgacaattttatgtatggatattcctga |
217 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611645 |
tcatcatttttacatatattaaaaaaatagataatgttgtacctaaaaatatattagataatgtgttttatgtgacaattttatgtatggatattcctga |
3611744 |
T |
|
| Q |
218 |
aatattatgagtctagtaaggcttattttagagtgttgatgggttatataaatatttagaaaatacagttttgttgttgacaattgcttcatggattgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611745 |
aatattatgagtctagtaaggcttattttagagtgttgatgggttatataaatatttaaaaaatacagttttgttgttgacaattgcttcatggattgtt |
3611844 |
T |
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| Q |
318 |
caacatttgaaataaactgataggaagatagttttcgatgc-nnnnnnnnnnnnnnnnngtcgatagaatcatattttctttaatttttgggtgatcgaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3611845 |
caacatttgaaataaactgataggaagatagttttcgatgcaaaaaaacaaaaaaaaaagtcgatagaatcatattttctgtaatttttgggtgatcgaa |
3611944 |
T |
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| Q |
417 |
agttatctctttgcaaacccgctgcacttatagagcaactatcctttttgtttatttcagttagattgaatataaaaagccttctct |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611945 |
agttatctctttgcaaacccgctgcacttatagagcaactatcctttttgtttatttcagttagattgaatataaaaagccttctct |
3612031 |
T |
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