View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_7 (Length: 480)
Name: NF17282_high_7
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_7 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 33357538 - 33357999
Alignment:
| Q |
1 |
acaataaatcaattgaataattgaattgagaggaaaagatgtatgtaataagtaacaactaacctgagtgagattgttgtgacgaagatgagagacgata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357538 |
acaataaatcaattgaataattgaattgagaggaaaagatgtatataataagtaataactaacctgagtgagattgttgtgacgaagatgagagacgata |
33357637 |
T |
|
| Q |
101 |
agagaattaagatgtctatacagtttcccatcttcaactgtctgctccgacctacaactactactgttttccatttttggccgttgtcggcttcactaca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33357638 |
agagaattaagatgtctatacagtttcccatcttcaactgtctgctccgacctacaactactactgttttccatttttggctgttgtcggcttcactaca |
33357737 |
T |
|
| Q |
201 |
ctagttttagagtgtcagggaccaaatttgtccttaacattgtaccacatctaaatcttcttcagaaaccaaactaaagtaatcaaacaagcacaaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357738 |
ctagttttagagtgtcagggaccaaatttgtccttaacattgtaccacatctaaatcttcttcagaaaccaaactaaagtaatcaaacaagcacaaacaa |
33357837 |
T |
|
| Q |
301 |
tgaatcgaccaatgatatggaggttcgagattttttctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattcttct |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357838 |
tgaatcgaccaatgatatggaggttcgagattttttctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattcttct |
33357937 |
T |
|
| Q |
401 |
gtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaaagcatatttc |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357938 |
gtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaaagcatatttc |
33357999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 33283514 - 33283679
Alignment:
| Q |
298 |
caatgaatcgaccaatgatatggaggttcgagatttttt-ctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| | |
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| T |
33283514 |
caatgaatcgaccaatgatatggaggttcgagatttttttctgttgagattcagtagaaacttcatctgcaacaggtgaatccggtgcctccgcggatac |
33283613 |
T |
|
| Q |
397 |
ttctgtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaaagcatatttc |
462 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| ||| ||||| |
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| T |
33283614 |
ttctgtttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttc |
33283679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 298 - 452
Target Start/End: Original strand, 33386986 - 33387141
Alignment:
| Q |
298 |
caatgaatcgaccaatgatatggaggttcgagatttttt-ctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattc |
396 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |
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| T |
33386986 |
caatgaatcgacaaatgatatggaggtttgagatttttttctgttgagattcagtagaaacttcatctgcaacaggtgaatctgctgcctccacggatac |
33387085 |
T |
|
| Q |
397 |
ttctgtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaa |
452 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| |
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|
| T |
33387086 |
ttctctttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaa |
33387141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 353 - 462
Target Start/End: Original strand, 33261510 - 33261619
Alignment:
| Q |
353 |
gaaacttcatctgcaacaggtgaatctggtacctccacggattcttctgtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaa |
452 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| |
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| T |
33261510 |
gaaacttcatctgcagcaggtgaatctggtgcctccgcggatacttctgtttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaa |
33261609 |
T |
|
| Q |
453 |
agcatatttc |
462 |
Q |
| |
|
||| ||||| |
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|
| T |
33261610 |
tgcagatttc |
33261619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 33418459 - 33418553
Alignment:
| Q |
341 |
ggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattcttctgtttctttggctgatatggaggtttgagatatttt |
435 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||| |||||| ||||||||||| | ||| ||||| |||| |
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| T |
33418459 |
ggagattcaccagaaacttcatcggcaacaggtgaatcttgtacctccacggatacttccgtttctgtggctgatatgaaagttcgagatttttt |
33418553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 33302888 - 33302982
Alignment:
| Q |
341 |
ggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattcttctgtttctttggctgatatggaggtttgagatatttt |
435 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||| |||||| |||||||| || ||||| ||||| |||| |
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|
| T |
33302888 |
ggagattcactagaaacttcatcgataacaggtgaatcttgtacctccacagatacttccgtttctgtggctgatttgaaggttcgagatttttt |
33302982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 25668993 - 25668803
Alignment:
| Q |
52 |
gtaacaactaacctgagtgagattgttgtgacgaagatgagagacgataagagaattaagatgtctatacagtttcccatcttcaactgtctgctccgac |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
25668993 |
gtaacaactaacctgagtgagattgttgtgacgaagatgagcgacgataagagaattgaggtgtctatacagtttcccatcttcaactgtctgctccgac |
25668894 |
T |
|
| Q |
152 |
ctacaactactactgttttccatttttggccgttgtcggcttcactacactagttttagagtgtcagggaccaaatttgtccttaacattgtaccacat |
250 |
Q |
| |
|
|| ||||||||||||||||||||||| | || || ||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||| |
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|
| T |
25668893 |
ct---actactactgttttccatttttg-----tttccttttgtctacagtagttttagagtgtcaaggaccaaatttgtccttaaaattacaccacat |
25668803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 298 - 446
Target Start/End: Complemental strand, 17442022 - 17441873
Alignment:
| Q |
298 |
caatgaatcgaccaatgatatggaggttcgagatttttt-ctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
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| T |
17442022 |
caatgaatcgaccaatgatatggaggttcaagatttttttctgtggagattcagtagaaacttcatctgtaacaggtgaatctggtacctccacagatac |
17441923 |
T |
|
| Q |
397 |
ttctgtttctttggctgatatggaggtttgagatatttttctgtggatga |
446 |
Q |
| |
|
||||| |||| |||||||||||| |||| ||||| ||||||||||||||| |
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|
| T |
17441922 |
ttctgcttctgtggctgatatggcggttcgagatttttttctgtggatga |
17441873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 5277 - 5442
Alignment:
| Q |
298 |
caatgaatcgaccaatgatatggaggttcgagatttttt-ctgtggagattcagtagaaacttcatctgcaacaggtgaatctggtacctccacggattc |
396 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| | |
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|
| T |
5277 |
caatgaattgaccaatgatatggaggttcgagatttttttctgttgagattcagtagaaacttcatttgcaacaggtgaattcggtgcctccgcggatac |
5376 |
T |
|
| Q |
397 |
ttctgtttctttggctgatatggaggtttgagatatttttctgtggatgatatgaaagcatatttc |
462 |
Q |
| |
|
||| |||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| ||| ||||| |
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|
| T |
5377 |
ttcagtttctgtggctgatatggaggttcgagatttatttctgtggatgacatgaatgcagatttc |
5442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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