View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_high_8 (Length: 475)
Name: NF17282_high_8
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 4847041 - 4846598
Alignment:
| Q |
16 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaattcttaaaacaattttacatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847041 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaattcttaaaacaattttacatta |
4846942 |
T |
|
| Q |
116 |
tttgtaacatagtacactttttacatctgaaaatattggtccattattctgacctgtgtcaactaacatgtcacatgttcacattgtggatgacaaatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846941 |
tttgtaacatagtacactttttacatctgaaaatattggtccattattctgacctgtgtcaactaacatgtcacatgttcacattgtggatgacaaatca |
4846842 |
T |
|
| Q |
216 |
acaattcattgtacatcacagtttatttgggtatgtactatgtcctttttcatagatcta-nnnnnnnncaaa-accctattcccactataactgatata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
4846841 |
acaattcattgtacatcacagtttatttgggtatgtactatgtcctttttcatagatctatttttttttcaaacaccctattcccactataactgatata |
4846742 |
T |
|
| Q |
314 |
tatggtaaatttttgtttgtgaaaatgttactaaaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattgggg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846741 |
tatggtaaatttttgtttgtgaaaatgttactaaaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattgggg |
4846642 |
T |
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| Q |
414 |
accttcaacacatataaacttctcggtatgtttcacggcatagt |
457 |
Q |
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| T |
4846641 |
accttcaacgcatataaacttctcggtatgtttcacggcatagt |
4846598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 347 - 441
Target Start/End: Original strand, 47753422 - 47753516
Alignment:
| Q |
347 |
aaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggaccttcaacacatataaacttctcggta |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||| ||||| |
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| T |
47753422 |
aaggtggttatgatatggaagagaaagctgcaagagcttatgatcaagcagctcttaagtattggggaccttcaacacacataaacttcccggta |
47753516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 47753097 - 47753174
Alignment:
| Q |
16 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaa |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||| |
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| T |
47753097 |
atgaagcacatttatgggataacagttgcaagaaggaaggacaaacaagaaaaggaagacaaggttagtgagcaaaaa |
47753174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7210461 - 7210525
Alignment:
| Q |
16 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
80 |
Q |
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| T |
7210461 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggt |
7210525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 5178200 - 5178132
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggacc |
416 |
Q |
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| T |
5178200 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtattggggacc |
5178132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 40190010 - 40190097
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggaccttcaacacatataaacttc |
435 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||| || || ||||| ||||||||||| || || || ||||||||| |
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| T |
40190010 |
aggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtattggggaccatctactcacataaacttc |
40190097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 53235177 - 53235112
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattgggg |
413 |
Q |
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|||||| ||||||| |||||||||||| || |||||||||||||||||||||||||| || ||||| |
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| T |
53235177 |
aggtggctatgataaggaagagaaagcagctagagcttatgatcttgctgctctcaagtactgggg |
53235112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 40189491 - 40189555
Alignment:
| Q |
16 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
80 |
Q |
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||||||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||||||||| |
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| T |
40189491 |
atgaagctcatttatgggacaacagttgcaagaaagaaggccaaagcagaaaaggaagacaaggt |
40189555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 53235986 - 53235922
Alignment:
| Q |
16 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
80 |
Q |
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||||||||||| ||||||| || ||||||| | |||||| |||| |||||||||||||||||| |
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| T |
53235986 |
atgaagcacatctatgggacaatagttgcagaagggaaggacaaagtaggaaaggaagacaaggt |
53235922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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