View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17282_low_11 (Length: 458)

Name: NF17282_low_11
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17282_low_11
NF17282_low_11
[»] chr2 (5 HSPs)
chr2 (255-449)||(33379768-33379961)
chr2 (19-238)||(2103915-2104133)
chr2 (19-138)||(44259874-44259993)
chr2 (81-238)||(30706875-30707032)
chr2 (20-68)||(18242197-18242245)
[»] chr6 (10 HSPs)
chr6 (19-238)||(26497904-26498124)
chr6 (19-138)||(7201035-7201154)
chr6 (19-138)||(28847817-28847937)
chr6 (76-138)||(3361856-3361918)
chr6 (78-138)||(10669894-10669954)
chr6 (76-138)||(33986452-33986514)
chr6 (76-138)||(609725-609788)
chr6 (78-137)||(29288529-29288588)
chr6 (20-68)||(1112546-1112594)
chr6 (206-238)||(7200952-7200984)
[»] chr1 (8 HSPs)
chr1 (18-238)||(5882577-5882797)
chr1 (20-130)||(24892061-24892172)
chr1 (19-137)||(50262406-50262524)
chr1 (76-138)||(9672355-9672418)
chr1 (19-68)||(26687743-26687792)
chr1 (76-134)||(27564957-27565015)
chr1 (19-68)||(50509786-50509835)
chr1 (103-133)||(23688550-23688580)
[»] chr7 (10 HSPs)
chr7 (19-238)||(38190317-38190537)
chr7 (19-238)||(22317732-22317950)
chr7 (22-238)||(33540148-33540366)
chr7 (19-138)||(27224332-27224451)
chr7 (29-138)||(44767382-44767491)
chr7 (76-138)||(19468431-19468493)
chr7 (20-68)||(39608138-39608186)
chr7 (19-68)||(40230888-40230936)
chr7 (186-237)||(19468540-19468591)
chr7 (186-237)||(27224501-27224552)
[»] chr8 (9 HSPs)
chr8 (32-138)||(33474536-33474642)
chr8 (78-238)||(24534725-24534885)
chr8 (82-238)||(6976671-6976827)
chr8 (19-238)||(9946543-9946763)
chr8 (19-138)||(44004368-44004493)
chr8 (87-138)||(21467012-21467063)
chr8 (33-138)||(13569307-13569414)
chr8 (19-68)||(13751492-13751541)
chr8 (19-67)||(6976614-6976662)
[»] chr5 (5 HSPs)
chr5 (19-238)||(6967348-6967568)
chr5 (19-236)||(22867865-22868085)
chr5 (19-138)||(11245313-11245433)
chr5 (19-127)||(27246159-27246266)
chr5 (79-126)||(18673804-18673851)
[»] chr4 (6 HSPs)
chr4 (20-138)||(16061503-16061623)
chr4 (19-237)||(38138591-38138808)
chr4 (82-238)||(36441192-36441347)
chr4 (76-127)||(6166333-6166384)
chr4 (20-68)||(6087099-6087147)
chr4 (20-68)||(32728025-32728073)
[»] chr3 (1 HSPs)
chr3 (20-138)||(42624685-42624804)
[»] scaffold0005 (1 HSPs)
scaffold0005 (102-238)||(284385-284520)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 449
Target Start/End: Original strand, 33379768 - 33379961
Alignment:
Q  255 aaatatccgtatgtataactcatacggtaaaatattgctacgatctttttcttgcaagtgtgaagnnnnnnnnncacatgtaatttaaaaaacttttggg 354  Q
    ||||||| ||||||| |||||||| |||||||||||| ||||||||| |||||| ||||| || |         ||||||||||||||||||||||||||    
T  33379768 aaatatctgtatgtacaactcatatggtaaaatattgttacgatcttattcttgtaagtgcgatgaaaaaaa--cacatgtaatttaaaaaacttttggg 33379865  T
Q  355 agcagtggttacaaa--tttagaatatttcaagaactgtgttgtaaagttatttttgtttataatttttcagatttatgactgaaccatagtataat 449  Q
    |||||||||||||||  |||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  33379866 agcagtggttacaaatttttaaaatattccaagaactgtgttgtagagtta-ttttgttgataatttttcagatttatgactgaaccataatataat 33379961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 2104133 - 2103915
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| ||||| |||||||||||| ||||| ||||||| ||||||||        ||||||||||| ||||||| |||||||||||| ||||||||||    
T  2104133 attattagccaccaaaatcaaaattagcaattatttttacgaaagacgtattttttaacttagaaatataaacatgaaacatgattttt-acttagaaat 2104035  T
Q  119 tgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactcg 218  Q
    ||||||||||||||||||||            ||||||| ||||||||||||||||||||       |||||| |||||||||||| |||| ||| ||||    
T  2104034 tgaaacatgaaacatgtttaattttcttttttgagtgggggtggggatattgagcaataatttttttcttgaggcccatcactttgggaggtccagctcg 2103935  T
Q  219 attgagctctttgcactccc 238  Q
     |||||||||||||||||||    
T  2103934 gttgagctctttgcactccc 2103915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 44259874 - 44259993
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| |||| ||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||||  |||||||||||||||||||||||    
T  44259874 attattagccactgaaatcaaaattagcaattatttttactaaagacgtgtttttaaacttagaaatagaaacataaaacatgattttttacttagaaat 44259973  T
Q  119 tgaaacatgaaacatgttta 138  Q
    ||||||| ||||||| ||||    
T  44259974 tgaaacaagaaacattttta 44259993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 30707032 - 30706875
Alignment:
Q  81 gaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataann 180  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||            |||| || |||||||||||||||| |||      
T  30707032 gaaatagaaatatggaacatgattttttacttaaaaattgaaacatgaaacatgtttatttttcttttttgagttggtgtggggatattgagcagtaatt 30706933  T
Q  181 nnnnncttgagacccatcactttgagaggcccaactcgattgagctctttgcactccc 238  Q
         |||||| |||||||||||| |||  |||||||  |||| ||||||||||||||    
T  30706932 tttttcttgaggcccatcactttgggagatccaactcagttgaactctttgcactccc 30706875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 18242197 - 18242245
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    |||||| ||||| |||| ||||||| ||||| |||||||||||||||||    
T  18242197 ttattaaccaccaaaattaaaattagcaattatttttactaaagacgtg 18242245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 26497904 - 26498124
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatga-ttttttacttagaaa 117  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||||||||||||| ||||||| |||||||    
T  26497904 attattagccaccgaaatcaaaattagcaattatttttactaaagacgtgttttttaacttagaaatagaaacatggaacatgatttttttatttagaaa 26498003  T
Q  118 ttgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactc 217  Q
    |||||||||||||||||||||             |||||| ||||||||||||||||||||       |||||| ||||||||||||||| ||||| |||    
T  26498004 ttgaaacatgaaacatgtttatttttcttttttcagtgggggtggggatattgagcaataatttttttcttgaggcccatcactttgagaagcccagctc 26498103  T
Q  218 gattgagctctttgcactccc 238  Q
     |||||| |||||||||||||    
T  26498104 aattgagatctttgcactccc 26498124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 7201154 - 7201035
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| |||| ||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||||| |||||||||||| ||||||||||    
T  7201154 attattagccactgaaatcaaaattagcaattatttttactaaagacgtgttttttaacttagaaatagaaacatgaaacatgatttttgacttagaaat 7201055  T
Q  119 tgaaacatgaaacatgttta 138  Q
    ||||||||||||||||||||    
T  7201054 tgaaacatgaaacatgttta 7201035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 28847817 - 28847937
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgatttt-ttacttagaaa 117  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||| |||       |||| |||||| ||||||||||||||||||| |||||||||||    
T  28847817 attattagccactgaaatcaaaattaacaattatttttactaaagatgtgttttttaactttgaaataaaaacatggaacatgatttttttacttagaaa 28847916  T
Q  118 ttgaaacatgaaacatgttta 138  Q
    |||||||||||||||||||||    
T  28847917 ttgaaacatgaaacatgttta 28847937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 3361918 - 3361856
Alignment:
Q  76 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttta 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3361918 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatattta 3361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 10669954 - 10669894
Alignment:
Q  78 ttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttta 138  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10669954 ttagaaatagaaacatggaacatgattttttacttagaaattaaaacatgaaacatattta 10669894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 33986514 - 33986452
Alignment:
Q  76 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttta 138  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||    
T  33986514 acttagaaataaaaacatggagcataattttttacttagaaattgaaacatgaaatatgttta 33986452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 609725 - 609788
Alignment:
Q  76 acttagaaatagaaacatggaacatgatttt-ttacttagaaattgaaacatgaaacatgttta 138  Q
    |||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  609725 acttggaaatagaaacatgaaacatgatttttttacttataaattgaaacatgaaacatgttta 609788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 29288529 - 29288588
Alignment:
Q  78 ttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttt 137  Q
    ||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  29288529 ttagaaatagaaacatggaacatgtgtttttacttagaaatagtaacatgaaacatgttt 29288588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 1112546 - 1112594
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||||||    
T  1112546 ttattagccaccgaaattaaaattagcaattatttttactaaagacgtg 1112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 7200984 - 7200952
Alignment:
Q  206 gaggcccaactcgattgagctctttgcactccc 238  Q
    |||||||||||||||||||||||||||||||||    
T  7200984 gaggcccaactcgattgagctctttgcactccc 7200952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 5882577 - 5882797
Alignment:
Q  18 aattattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaa 117  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||    
T  5882577 aattattaaccaccgaaatcaaaattaataattatttttactaaagacgtgttttttaacttagaaattgaaacatggaacatgattttttacttagaaa 5882676  T
Q  118 ttgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactc 217  Q
    |||||||||||||||||||||            ||||||| ||||||||||||||||||||       |||||| ||||||||| || ||||| || |||    
T  5882677 ttgaaacatgaaacatgtttacttttcttttttgagtgggggtggggatattgagcaataatttttttcttgaggcccatcactctgggaggctcagctc 5882776  T
Q  218 gattgagctctttgcactccc 238  Q
    | ||||  ||||| |||||||    
T  5882777 ggttgaattctttacactccc 5882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 24892061 - 24892172
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnna-cttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    |||||| ||||| ||| |||||||||||||| |||||||||||||||||       | |||||||||||||||||||||| |||||||||||||||||||    
T  24892061 ttattagccaccaaaaccaaaattaacaattatttttactaaagacgtgcttttttaacttagaaatagaaacatggaacctgattttttacttagaaat 24892160  T
Q  119 tgaaacatgaaa 130  Q
    ||||||||||||    
T  24892161 tgaaacatgaaa 24892172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 50262524 - 50262406
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| |||||  ||||||||||| ||||| |||||  ||| ||||||       ||||||||||||||||||| |||||| ||||||||||||||||    
T  50262524 attattaaccaccataatcaaaattagcaattattttttttaaggacgtgtttttttacttagaaatagaaacatgaaacatgtttttttacttagaaat 50262425  T
Q  119 tgaaacatgaaacatgttt 137  Q
     |||| || ||||||||||    
T  50262424 agaaatataaaacatgttt 50262406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 9672418 - 9672355
Alignment:
Q  76 acttagaaatagaaacatggaacatgatttttt-acttagaaattgaaacatgaaacatgttta 138  Q
    ||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9672418 acttaaaaataaaagcatggaacatgatttttttacttagaaattgaaacatgaaacatgttta 9672355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 26687743 - 26687792
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  26687743 attattaaccaccgaaattaaaattaacaattatttttactaaagacgtg 26687792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 27565015 - 27564957
Alignment:
Q  76 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatg 134  Q
    ||||| |||||||||||| ||||||| ||||||||||| |||| |||||||| ||||||    
T  27565015 acttaaaaatagaaacatagaacatgtttttttacttaaaaatagaaacatggaacatg 27564957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 50509835 - 50509786
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    ||||||| ||||| |||||||||||| ||||| |||||||||||||||||    
T  50509835 attattagccaccaaaatcaaaattagcaattatttttactaaagacgtg 50509786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 133
Target Start/End: Original strand, 23688550 - 23688580
Alignment:
Q  103 ttttttacttagaaattgaaacatgaaacat 133  Q
    |||||||||||||||||||||||||||||||    
T  23688550 ttttttacttagaaattgaaacatgaaacat 23688580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 38190317 - 38190537
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| ||||| ||||||||||||  |||| |||||||||||||||||       ||||||||||| ||||||| |||||||||||||||||||||||    
T  38190317 attattagccaccaaaatcaaaattagaaattatttttactaaagacgtgttttttaacttagaaataaaaacatgaaacatgattttttacttagaaat 38190416  T
Q  119 tgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataa-nnnnnnncttgagacccatcactttgagaggcccaactc 217  Q
    |||||||||||||||||||             ||||||| |||||||||||||||| |||        ||| ||| ||||||||||| |||||||| |||    
T  38190417 tgaaacatgaaacatgttttttttttttttttgagtgggggtggggatattgagcattaattttttttctttagatccatcactttgggaggcccagctc 38190516  T
Q  218 gattgagctctttgcactccc 238  Q
    | |||||||||||||||||||    
T  38190517 ggttgagctctttgcactccc 38190537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 22317732 - 22317950
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    |||||||  ||| |||||||||||||  |||| ||||||||| |||||||       ||||| ||||||||||||| |||||||||||||||||||||||    
T  22317732 attattagtcactgaaatcaaaattagaaattatttttactacagacgtgttttttaacttataaatagaaacatgaaacatgattttttacttagaaat 22317831  T
Q  119 tgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactcg 218  Q
    |||||||| |||||||||||            ||||| | || |||||||||||||||||       |||||||||||||||||| ||||||||| ||||    
T  22317832 tgaaacataaaacatgtttatttttcttttttgagtgcg-gtcgggatattgagcaataatttttttcttgagacccatcactttaagaggcccagctcg 22317930  T
Q  219 attgagctctttgcactccc 238  Q
     |||| ||||||||||||||    
T  22317931 gttgaactctttgcactccc 22317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 33540148 - 33540366
Alignment:
Q  22 attacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgatttt-ttacttagaaattg 120  Q
    |||| |||| ||||||||||||| ||||| |||||||||||||| ||       |||||||||| |||||||||||||||||||| ||||||||||||||    
T  33540148 attaaccactgaaatcaaaattagcaattatttttactaaagacctgttttttaacttagaaattgaaacatggaacatgatttttttacttagaaattg 33540247  T
Q  121 aaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaata-annnnnnncttgagacccatcactttgagaggcccaactcga 219  Q
    ||||||||||||| ||||            ||||||| |||||||||||||||||||         |||||| |||||||||||| || |||||||||      
T  33540248 aaacatgaaacatatttatttttcttttctgagtgggggtggggatattgagcaatatttttttttcttgaggcccatcactttgggatgcccaactcag 33540347  T
Q  220 ttgagctctttgcactccc 238  Q
    |||||||||||||||||||    
T  33540348 ttgagctctttgcactccc 33540366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 27224332 - 27224451
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    |||||||  ||||||||||||||||| ||||| |||||||| ||||| ||       ||||||||||||||||||| |||||||||||||||||||||||    
T  27224332 attattagtcaccgaaatcaaaattagcaattatttttactgaagacatgttttttaacttagaaatagaaacatgcaacatgattttttacttagaaat 27224431  T
Q  119 tgaaacatgaaacatgttta 138  Q
    |||||||| |||||||||||    
T  27224432 tgaaacataaaacatgttta 27224451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 44767382 - 44767491
Alignment:
Q  29 accgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaattgaaacatga 128  Q
    |||||||||||||||| ||||| ||||||||||| || ||       ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  44767382 accgaaatcaaaattagcaattatttttactaaatacatgttttttaacttagaaatagaaacatggaatgtgattttttacttagaaattgaaacatga 44767481  T
Q  129 aacatgttta 138  Q
    ||||||||||    
T  44767482 aacatgttta 44767491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 19468431 - 19468493
Alignment:
Q  76 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttta 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19468431 acttagaaatagaaatatggaacatgattttttacttagaaattgaaacatgaaacatgttta 19468493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 39608186 - 39608138
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  39608186 ttattagccaccgaaattaaaattaacaattatttttactaaagacgtg 39608138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40230936 - 40230888
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  40230936 attattagccaccgaaatcaaaattaacaattatttttac-aaagacgtg 40230888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 19468540 - 19468591
Alignment:
Q  186 cttgagacccatcactttgagaggcccaactcgattgagctctttgcactcc 237  Q
    |||||||||||||||||||  || |||| |||| ||||||||||||||||||    
T  19468540 cttgagacccatcactttggaagacccagctcggttgagctctttgcactcc 19468591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 27224501 - 27224552
Alignment:
Q  186 cttgagacccatcactttgagaggcccaactcgattgagctctttgcactcc 237  Q
    |||||| ||||||| |||   |||||||||||||||||||||||||||||||    
T  27224501 cttgaggcccatcatttttgaaggcccaactcgattgagctctttgcactcc 27224552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 33474642 - 33474536
Alignment:
Q  32 gaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaac 131  Q
    ||||||||||||| ||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33474642 gaaatcaaaattagcaattatttttactaaagacgtgtttttaaacttagaaatagaaacatggaacatgattttttagttagaaattgaaacatgaaac 33474543  T
Q  132 atgttta 138  Q
    |||||||    
T  33474542 atgttta 33474536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 24534885 - 24534725
Alignment:
Q  78 ttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaata 177  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||            |||| ||  || | |||||||||||||    
T  24534885 ttagaaatagaaacatggaacataattctttacttagaaattgaaacatgaaacatgtttatttttcttttttgagtagggatgagaatattgagcaata 24534786  T
Q  178 annnnnnncttgagacccatcactttgagaggcccaactcgattgagctctttgcactccc 238  Q
    |       |||||| |||||||||||| |||||||| ||||||||||||| ||||||||||    
T  24534785 atttttttcttgaggcccatcactttgggaggcccagctcgattgagctcgttgcactccc 24534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 6976671 - 6976827
Alignment:
Q  82 aaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannn 181  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||            |||||||  |||||||||||| ||||||       
T  6976671 aaatagtaacatggaacatgattttttatttagaaattgaaacatgaaatatgtttatttttcttttctgagtggggatggggatattgaacaataattt 6976770  T
Q  182 nnnncttgagacccatcactttgagaggcccaactcgattgagctctttgcactccc 238  Q
        ||||||  ||||||||||| ||||||||||||| |||| ||||||||||||||    
T  6976771 ttttcttgaggtccatcactttgggaggcccaactcggttgaactctttgcactccc 6976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 9946763 - 9946543
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnna-cttagaaatagaaacatggaacatgatttttt-acttagaa 116  Q
    ||||||| ||||| |||||||||||| ||||| ||||||||||||| |||       | |||| ||||||||||||||||  ||||||||| ||||||||    
T  9946763 attattaaccaccaaaatcaaaattaccaattatttttactaaagatgtgcttttttaacttaaaaatagaaacatggaatctgatttttttacttagaa 9946664  T
Q  117 attgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaact 216  Q
    ||||||||||||||||||||||            ||||||| |||||||||||||||||| |       |||||| |||||||||||  |||  ||| ||    
T  9946663 attgaaacatgaaacatgttta-gttttctttttgagtgggggtggggatattgagcaatgatttttttcttgaggcccatcactttaggagatccagct 9946565  T
Q  217 cgattgagctctttgcactccc 238  Q
    || |||||||||||||||||||    
T  9946564 cggttgagctctttgcactccc 9946543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 44004368 - 44004493
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttt-------tact 111  Q
    ||||||| ||| | |||||||||||||||||| |||||||||||||||||       ||| ||||||||||||||||||||||| ||||       ||||    
T  44004368 attattagccatcaaaatcaaaattaacaattatttttactaaagacgtgttttttaact-agaaatagaaacatggaacatgactttttagtttttact 44004466  T
Q  112 tagaaattgaaacatgaaacatgttta 138  Q
    |||||||||||||||||||||||||||    
T  44004467 tagaaattgaaacatgaaacatgttta 44004493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 21467012 - 21467063
Alignment:
Q  87 gaaacatggaacatgattttttacttagaaattgaaacatgaaacatgttta 138  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  21467012 gaaacatgaaacatgattttttacatagaaattgaaacatgaaacatgttta 21467063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 13569307 - 13569414
Alignment:
Q  33 aaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacat--ggaacatgattttttacttagaaattgaaacatgaaa 130  Q
    |||||||||||| ||||| |||||| ||| ||||||       ||||||||||||||||||  ||||||||  |||||||||| ||||| ||||||||||    
T  13569307 aaatcaaaattagcaattatttttattaaggacgtgttttttaacttagaaatagaaacatatggaacatgggtttttacttaaaaattaaaacatgaaa 13569406  T
Q  131 catgttta 138  Q
    ||| ||||    
T  13569407 catattta 13569414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 13751492 - 13751541
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    ||||||| ||| |||||| ||||||| ||||| |||||||||||||||||    
T  13751492 attattagccatcgaaattaaaattagcaattatttttactaaagacgtg 13751541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 6976614 - 6976662
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgt 67  Q
    ||||||| ||||| |||| ||||||| ||||| ||||||||||||||||    
T  6976614 attattagccaccaaaattaaaattagcaattatttttactaaagacgt 6976662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 6967348 - 6967568
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| |||| ||||| ||||||| |||||  ||||||||| ||||||       ||||| ||||||||||||| |||||||||||||||||| ||||    
T  6967348 attattagccactgaaattaaaattagcaattacttttactaaggacgtgctttttaacttataaatagaaacatgaaacatgattttttacttaaaaat 6967447  T
Q  119 tgaaacatgaaacatgttta-nnnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactc 217  Q
    ||||||||||||||||||||             || |||| ||||||||||||| ||||||       |||||| || ||||||||| ||||||||||||    
T  6967448 tgaaacatgaaacatgtttatttttctttttttgattgggggtggggatattgaacaataatttttttcttgaggccaatcactttgggaggcccaactc 6967547  T
Q  218 gattgagctctttgcactccc 238  Q
    |||||||||||||||||||||    
T  6967548 gattgagctctttgcactccc 6967568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 22868085 - 22867865
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgatt---ttttacttaga 115  Q
    ||||||| |||| ||||||| ||||| ||||| |||||||||||||||||       |||||||||||||||||||||||||||||   |||||||||||    
T  22868085 attattagccactgaaatcataattagcaattatttttactaaagacgtgttttaaaacttagaaatagaaacatggaacatgatttttttttacttaga 22867986  T
Q  116 aattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaac 215  Q
    ||||| |||||||||||||||||            ||||||| |||| |||||||||||||||       || ||  | |||||||||| |||||||| |    
T  22867985 aattgcaacatgaaacatgtttatttttcttttttgagtgggggtggagatattgagcaataatttttttctcgaatctcatcactttgggaggcccagc 22867886  T
Q  216 tcgattgagctctttgcactc 236  Q
    |||||||| ||||||||||||    
T  22867885 tcgattgaactctttgcactc 22867865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 11245433 - 11245313
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgatt-ttttacttagaaa 117  Q
    ||||||| |||| ||||||||||||| |||||  |||||||||||| |||       ||||||||||||||||||||||||||||| ||||||||  |||    
T  11245433 attattagccactgaaatcaaaattagcaattacttttactaaagatgtgtttttaaacttagaaatagaaacatggaacatgatttttttacttcaaaa 11245334  T
Q  118 ttgaaacatgaaacatgttta 138  Q
    |||||||||||||||| ||||    
T  11245333 ttgaaacatgaaacatattta 11245313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 27246266 - 27246159
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| ||| |||||||||||||| |||||  |||||||||||| |||       |||||||||||||| |||| |||||||||||||||||||||||    
T  27246266 attattagccatcgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaatagaa-catgaaacatgattttttacttagaaat 27246168  T
Q  119 tgaaacatg 127  Q
    |||||||||    
T  27246167 tgaaacatg 27246159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 18673804 - 18673851
Alignment:
Q  79 tagaaatagaaacatggaacatgattttttacttagaaattgaaacat 126  Q
    |||||||| |||| ||||||||| |||||||||||||||| |||||||    
T  18673804 tagaaatataaacttggaacatgtttttttacttagaaatagaaacat 18673851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 16061503 - 16061623
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgttttt-actaaagacgtgnnnnnnna-cttagaaatagaaacatggaacatgattttttacttagaaa 117  Q
    |||||| |||||||||||||||||| ||||| ||||| ||||||||||||       | |||||||||||||||||||||| ||||||||||||||||||    
T  16061503 ttattagccaccgaaatcaaaattagcaattattttttactaaagacgtgcttttttaacttagaaatagaaacatggaacctgattttttacttagaaa 16061602  T
Q  118 ttgaaacatgaaacatgttta 138  Q
    |||||||||||||||||||||    
T  16061603 ttgaaacatgaaacatgttta 16061623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 38138808 - 38138591
Alignment:
Q  19 attattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnacttagaaatagaaacatggaacatgattttttacttagaaat 118  Q
    ||||||| || || |||||||||| ||||||| |||||||||||||| ||       ||||||||| ||||||||| || ||||||||||||||||||||    
T  38138808 attattaacccccaaaatcaaaatcaacaattatttttactaaagacatgtttcttaacttagaaaaagaaacatgaaatatgattttttacttagaaat 38138709  T
Q  119 tgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcactttgagaggcccaactcg 218  Q
    |||| |||||||||||||||            ||||||| ||||||||||||||||||||       ||||||||||||||| |||||||||| |  |||    
T  38138708 tgaatcatgaaacatgtttatttttcttttttgagtgggggtggggatattgagcaataa-ttttttcttgagacccatcacattgagaggcctagatcg 38138610  T
Q  219 attgagctctttgcactcc 237  Q
     |||| |||||||| ||||    
T  38138609 gttgaactctttgcgctcc 38138591  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 36441192 - 36441347
Alignment:
Q  82 aaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannn 181  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||            ||||||| ||| ||||||||| ||||||       
T  36441192 aaatagaaacatagaacatgattttt-acttggaaattgaaacatgaaacatgtttatttttcttttttgagtgggggtgtggatattgaacaataattt 36441290  T
Q  182 nnnncttgagacccatcactttgagaggcccaactcgattgagctctttgcactccc 238  Q
        |||||| |||||||||||| ||| |||| |||| |||||||||||||||||||    
T  36441291 ttttcttgaggcccatcactttgggagacccagctcggttgagctctttgcactccc 36441347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 6166384 - 6166333
Alignment:
Q  76 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatg 127  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  6166384 acttagaaatagaaatatgaaacatgattttttacatagaaattgaaacatg 6166333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6087099 - 6087147
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||||||    
T  6087099 ttattagccaccgaaattaaaattagcaattatttttactaaagacgtg 6087147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32728025 - 32728073
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtg 68  Q
    |||||| ||||| |||| ||||||||||||| |||||||||||| ||||    
T  32728025 ttattagccaccaaaattaaaattaacaattatttttactaaagtcgtg 32728073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 42624804 - 42624685
Alignment:
Q  20 ttattacccaccgaaatcaaaattaacaattgtttttactaaagacgtgnnnnnnnactt-agaaatagaaacatggaacatgattttttacttagaaat 118  Q
    |||||| |||||||||| ||||||| ||||| |||||| ||||||||||       | || ||||||||||||||||||| | |||||||||||| ||||    
T  42624804 ttattagccaccgaaattaaaattagcaattatttttattaaagacgtgctatttcaatttagaaatagaaacatggaacctaattttttacttaaaaat 42624705  T
Q  119 tgaaacatgaaacatgttta 138  Q
    ||||||||||||||||||||    
T  42624704 tgaaacatgaaacatgttta 42624685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 284385 - 284520
Alignment:
Q  102 attttttacttagaaattgaaacatgaaacatgtttannnnnnnnnnnngagtgggagtggggatattgagcaataannnnnnncttgagacccatcact 201  Q
    |||||||||||||||||| ||||||||| ||||||||            ||||||| ||||||||||||||||||||       |||||| | |||||||    
T  284385 attttttacttagaaattaaaacatgaa-catgtttatttttcttttttgagtgggggtggggatattgagcaataatttttttcttgaggctcatcact 284483  T
Q  202 ttgagaggcccaactcgattgagctctttgcactccc 238  Q
    ||  |||||||||||||||| | |||||| |||||||    
T  284484 ttaggaggcccaactcgattaaactctttacactccc 284520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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