View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17282_low_19 (Length: 319)

Name: NF17282_low_19
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17282_low_19
NF17282_low_19
[»] chr4 (1 HSPs)
chr4 (17-308)||(52805103-52805394)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 52805103 - 52805394
Alignment:
Q  17 cttttcacttgaatcatcattgccaagtgcaagactaatctttacttctttaccttccatgcttgcaatggaatcaaagaccggctttgttgtttccctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52805103 cttttcacttgaatcatcattgccaagtgcaagactaatctttacttctttaccttccatgcttgcaatggaatcaaagaccggctttgttgtttccctt 52805202  T
Q  117 ttatcattgaaattgaactcaatggtgctgcatgattgttggcgacggaatcgaggtgtaagattggaggtgtgagatatgatgcttgatgaattattga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52805203 ttatcattgaaattgaactcaatggtgctgcatgattgttggcgacggaatcgaggtgtaagattggaggtgtgagatatgatgcttgatgaattattga 52805302  T
Q  217 gatttgaactgtgattattgttgctcctattccagtggttttggtgctgtttgttttggtgtagacagtggcatagtctattccattttctt 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52805303 ggtttgaactgtgattattgttgctcctattccagtggttttggtgctgtttgttttggtgtagacagtggcatagtctattccattttctt 52805394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University