View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_low_23 (Length: 290)
Name: NF17282_low_23
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 43181232 - 43181489
Alignment:
| Q |
9 |
caaacttctagcgatttaactaacatggtgagtattttgtagatatcaaaaacatgttttacgcaataacgcaaataaaaatagtatgtgattacttaat |
108 |
Q |
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| T |
43181232 |
caaacttctagcgatttaactaacatggtgagtattttgtagatatcaaaaacatgttttacgcaa--------atataaatagtatgtgattacttaat |
43181323 |
T |
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| Q |
109 |
caacaagtaagcacttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctc |
208 |
Q |
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| T |
43181324 |
caacaagtaagcacttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctc |
43181423 |
T |
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| Q |
209 |
atacatgaacggcccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatc |
274 |
Q |
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| T |
43181424 |
atacatgaacggcccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatc |
43181489 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 34312492 - 34312550
Alignment:
| Q |
122 |
cttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaa |
180 |
Q |
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| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatcaa |
34312550 |
T |
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