View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17282_low_26 (Length: 249)
Name: NF17282_low_26
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17282_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18223378 - 18223140
Alignment:
| Q |
1 |
ttcagaagcatttaatgcttgtacagtttatgtttttcttcctttttcagtgtttcacaaatttggaattatttctttggttcagtgtttgttgttcaac |
100 |
Q |
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| T |
18223378 |
ttcagaagcatttaatgcttgtgcagtttgcgtttttcttcctttttcagtgttgcacaaatttggaattttttctttggttcagtgtttgttgttcaac |
18223279 |
T |
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| Q |
101 |
ttgattctgcacaatttttgtttccatttttggattcaataaatgttcagacaaatcgactataaacatgatcttacacagtactgtgaaagtgaaagca |
200 |
Q |
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| T |
18223278 |
ttgattctgcacagtttttgtttccatttttggattcaataaatgttgagacaaatcgactataaacatgatcttacacagtactgtgaaagtgaaagca |
18223179 |
T |
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| Q |
201 |
gattctctgttttgcattaattgaaatttttgttttcat |
239 |
Q |
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| T |
18223178 |
gattctctgttttgcattaattgaaatttttgttttcat |
18223140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 23735632 - 23735495
Alignment:
| Q |
7 |
agcatttaatgcttgtacagtttatgttttt--cttccttt---ttcagtgtttcacaaatttggaattatttctttggttcagtgtttgttgttcaact |
101 |
Q |
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| T |
23735632 |
agcatttaatgcttgtgcagtttgtgtttttttctttctttcttttcagagttgcacaaatgtggaattatttatttgattccgtgtttgttcttgaact |
23735533 |
T |
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| Q |
102 |
tgattctgcacaatttttgtttccatttttggattcaa |
139 |
Q |
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| T |
23735532 |
tgattctgctcaatttttgtttccatttttggattcaa |
23735495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 18309847 - 18309765
Alignment:
| Q |
7 |
agcatttaatgcttgtacagtttatgttttt--cttccttt---ttcagtgtttcacaaatttggaattatttctttggttca |
84 |
Q |
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|||||||||||||||| |||||| ||||||| ||| |||| ||||| ||| ||||||| || |||||||||||||||||| |
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| T |
18309847 |
agcatttaatgcttgtgcagtttgtgtttttttctttctttcttttcagagttgcacaaatgtgaaattatttctttggttca |
18309765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 43015845 - 43015769
Alignment:
| Q |
44 |
ttttcagtgtttcacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgcacaatttttg |
120 |
Q |
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| T |
43015845 |
ttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccatttttg |
43015769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 43016033 - 43015967
Alignment:
| Q |
44 |
ttttcagtgtttcacaaatttggaattatttctttggttcagtgtttgttgttcaacttgattctgc |
110 |
Q |
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| T |
43016033 |
ttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgc |
43015967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 43015931 - 43015890
Alignment:
| Q |
69 |
ttatttctttggttcagtgtttgttgttcaacttgattctgc |
110 |
Q |
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| T |
43015931 |
ttatttctttggttcagtgtttgttcttgaacttgattctgc |
43015890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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