View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17282_low_6 (Length: 498)

Name: NF17282_low_6
Description: NF17282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17282_low_6
NF17282_low_6
[»] chr7 (12 HSPs)
chr7 (8-451)||(21945640-21946085)
chr7 (161-214)||(34986038-34986091)
chr7 (152-214)||(9559138-9559200)
chr7 (158-227)||(8607957-8608026)
chr7 (152-215)||(7362496-7362559)
chr7 (160-199)||(32915903-32915942)
chr7 (164-199)||(33450450-33450485)
chr7 (164-199)||(47500379-47500414)
chr7 (160-198)||(8149565-8149603)
chr7 (152-214)||(21151081-21151143)
chr7 (152-226)||(27387012-27387086)
chr7 (164-201)||(6568424-6568461)
[»] chr8 (5 HSPs)
chr8 (91-227)||(24557358-24557497)
chr8 (152-226)||(21492700-21492775)
chr8 (119-227)||(1098442-1098551)
chr8 (164-224)||(5033025-5033085)
chr8 (164-214)||(45113199-45113249)
[»] chr5 (10 HSPs)
chr5 (87-226)||(38283706-38283846)
chr5 (87-225)||(23253758-23253899)
chr5 (164-212)||(23253724-23253772)
chr5 (164-210)||(38283832-38283878)
chr5 (93-199)||(2582370-2582478)
chr5 (158-227)||(29340913-29340982)
chr5 (163-198)||(10242777-10242812)
chr5 (164-214)||(32129713-32129763)
chr5 (152-224)||(11775711-11775783)
chr5 (155-223)||(39902335-39902403)
[»] chr3 (15 HSPs)
chr3 (87-225)||(20485687-20485828)
chr3 (152-227)||(54911780-54911855)
chr3 (164-214)||(20485814-20485864)
chr3 (89-226)||(28229410-28229545)
chr3 (164-199)||(48084763-48084798)
chr3 (159-212)||(32577463-32577516)
chr3 (96-214)||(33338186-33338306)
chr3 (89-227)||(48950536-48950677)
chr3 (172-226)||(550920-550974)
chr3 (155-225)||(778906-778976)
chr3 (152-214)||(34373669-34373731)
chr3 (152-214)||(40851702-40851764)
chr3 (15-48)||(19897279-19897312)
chr3 (155-224)||(43720034-43720103)
chr3 (152-200)||(27033594-27033642)
[»] chr2 (4 HSPs)
chr2 (160-227)||(38396999-38397066)
chr2 (89-199)||(41072957-41073070)
chr2 (155-226)||(30824095-30824166)
chr2 (19-71)||(5876170-5876222)
[»] chr4 (10 HSPs)
chr4 (152-199)||(26428587-26428634)
chr4 (161-226)||(38865206-38865271)
chr4 (152-224)||(23610561-23610633)
chr4 (164-199)||(31862316-31862351)
chr4 (164-214)||(5763258-5763308)
chr4 (152-214)||(12153100-12153162)
chr4 (164-198)||(46804585-46804619)
chr4 (152-200)||(3952254-3952302)
chr4 (152-200)||(12241492-12241540)
chr4 (166-198)||(56564675-56564707)
[»] chr6 (8 HSPs)
chr6 (164-199)||(227660-227695)
chr6 (164-214)||(4804377-4804427)
chr6 (160-198)||(28696732-28696770)
chr6 (164-202)||(31708289-31708327)
chr6 (164-214)||(32737803-32737853)
chr6 (166-199)||(13888611-13888644)
chr6 (152-224)||(1249230-1249302)
chr6 (152-200)||(7162027-7162075)
[»] chr1 (9 HSPs)
chr1 (152-214)||(7841794-7841856)
chr1 (152-214)||(12380994-12381056)
chr1 (152-214)||(12385061-12385123)
chr1 (29-71)||(14969677-14969719)
chr1 (161-199)||(18976395-18976433)
chr1 (152-214)||(45977951-45978013)
chr1 (152-214)||(50294147-50294209)
chr1 (162-214)||(1228622-1228674)
chr1 (152-224)||(50484305-50484377)


Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 21945640 - 21946085
Alignment:
Q  8 attattctgcattaaaaagtgaaaataacatttattttaaagcaaatattttttgctaaaacgatattcatcgtgaaatagagatatagacacataaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21945640 attattctgcattaaaaagtgaaaataacatttattttaaagcaaatattttttgctaaaacgatatacatcgtgaaatagagatatagacacataaaat 21945739  T
Q  108 aggtggtgggccatatcattaaataggtctgactatcattaatattcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaa 207  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  21945740 aggtggtgggtcatatcattaaatagatctgactatcattaatattcaagaatttttgtgtctatatctctccaaatagtagaaatgaagaaaaatttaa 21945839  T
Q  208 atggagaatatcttaactcgaaatagagtgagtattacttttacttggaaaactaattagtaagtttctaattttctgtcggtatctttttaacagcatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21945840 atggagaatatcttaactcgaaatagagtgagtattacttttacttggaaatctaattagtaagtttctaattttctgtcggtatctttttaacagcatg 21945939  T
Q  308 gtctatgtctttctttattaggagataggaagtctatcgaacatgtgaagaagattaaatatgtccag--tgnnnnnnnnnnnnnnnnacacaatatatg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |                 ||||||||||||    
T  21945940 gtctatgtctttctttattaggagataggaagtctatcgaacatgtgaagaagattaaatatgtccagttttttttttttttttttttacacaatatatg 21946039  T
Q  406 tctagtgttgaacgttaatagtaatgaatttccaagagcctgcttt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21946040 tctagtgttgaacgttaatagtaatgaatttccaagagcctgcttt 21946085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 34986038 - 34986091
Alignment:
Q  161 ttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    |||| ||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  34986038 ttttatgtctatatctctccaaatggtagaaatggagaaagacataaatggaga 34986091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 9559138 - 9559200
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||||| |||||| |||||| || ||||||||||    
T  9559138 ttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaatggaga 9559200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 8608026 - 8607957
Alignment:
Q  158 aatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||  | ||||||||||  |||||||||||    
T  8608026 aatttttgtgtctctatctttccaaatggaacaaatggagaaagttataaatggagaggatcttaactcg 8607957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 7362559 - 7362496
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaa 215  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  |||||||||||    
T  7362559 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaa 7362496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 32915942 - 32915903
Alignment:
Q  160 tttttgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  32915942 tttttgtgtctttatctctccaaatggaagaaatggagaa 32915903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 33450485 - 33450450
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33450485 tgtgtttatatctctccaaatggtagaaatggagaa 33450450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 47500379 - 47500414
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    |||||||||||||||| |||||||||||||||||||    
T  47500379 tgtgtctatatctctctaaatggtagaaatggagaa 47500414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 8149603 - 8149565
Alignment:
Q  160 tttttgtgtctatatctctccaaatggtagaaatggaga 198  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  8149603 tttttgtgtctttatctctccaaatggtagaaatagaga 8149565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 21151143 - 21151081
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  21151143 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 21151081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 27387012 - 27387086
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    ||||||| ||||||||||||||||| ||||||| | | ||||| |||| |  |||||||||||  ||||||||||    
T  27387012 ttcaagattttttgtgtctatatctttccaaatcgaataaatgaagaagagattaaatggagaggatcttaactc 27387086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 6568424 - 6568461
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaa 201  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  6568424 tgtgtctttatctctccaaatggtagaaatggataaaa 6568461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 24557497 - 24557358
Alignment:
Q  91 atatagacacataaaataggtggtgggccatatcattaaataggtctgactatcattaata---ttcaagaatttttgtgtctatatctctccaaatggt 187  Q
    |||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||    ||||||||||||||||||||||| |||| |||||||    
T  24557497 atataggcacataaaataggtgatgggtcatatcattaaatacgtctgactatcattaattattttcaagaatttttgtgtctatatatctctaaatggt 24557398  T
Q  188 agaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    |||||| |  |||||||||||||||||  |||||||||||    
T  24557397 agaaattggcaaaaatttaaatggagaggatcttaactcg 24557358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 21492775 - 21492700
Alignment:
Q  152 ttcaagaatttt-tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| || | ||||||||||||| |||| |||||    
T  21492775 ttcaagatttttgtgtgtctttatctctccaaatggaagaaatggaaaagagtttaaatggagaagatctcaactc 21492700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 1098442 - 1098551
Alignment:
Q  119 catatcattaaataggtctgactatcattaata---ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaa 215  Q
    ||||| ||||||||||||| |||| |||||||    ||||||| ||||||||||||||| | |  ||||||||||||||   ||||| |||||||||||     
T  1098442 catattattaaataggtcttactagcattaattattttcaagattttttgtgtctatattttttgaaatggtagaaatg--aaaaaaattaaatggagat 1098539  T
Q  216 tatcttaactcg 227  Q
     |||||||||||    
T  1098540 gatcttaactcg 1098551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 5033085 - 5033025
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    ||||||| ||||||||||||| | ||||||||||||| || ||||||||||  ||||||||    
T  5033085 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 5033025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 45113249 - 45113199
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||||||||||||||||||||| ||||| ||||  || ||||||||||    
T  45113249 tgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggaga 45113199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 38283846 - 38283706
Alignment:
Q  87 agagatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcatta---atattcaagaatttttgtgtctatatctctccaaa 183  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||   || || |||||  |||||||||||||||||| |||    
T  38283846 agagatatagacacataaagtaggtggtgggtcatatcattaaataagtctgactatcattaattatttttaagaa--tttgtgtctatatctctctaaa 38283749  T
Q  184 tggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    |||||||||| || |||||||||||||||||  ||||||||||    
T  38283748 tggtagaaatagataaaaatttaaatggagaggatcttaactc 38283706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 23253758 - 23253899
Alignment:
Q  87 agagatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcattaata---ttcaagaatttttgtgtctatatctctccaaa 183  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||| | ||||||||||||    |||||||| |||||||||||||||| ||||||    
T  23253758 agagatagagacacataaaatgggtggtgggtcatgtcattaaataggtttcactatcattaattattttcaagaacttttgtgtctatatctatccaaa 23253857  T
Q  184 tggtagaaatggagaaaaatttaaatggagaatatcttaact 225  Q
    ||||| |||| ||| ||||||||||||||||  |||||||||    
T  23253858 tggtaaaaatagaggaaaatttaaatggagaggatcttaact 23253899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 23253772 - 23253724
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatgga 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23253772 tgtgtctctatctctccaaatggtagaaatggagaaaaatttaaatgga 23253724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 38283832 - 38283878
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatg 210  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  38283832 tgtgtctatatctctccaaattgtaaaaatggagaaaaatttaaatg 38283878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 2582370 - 2582478
Alignment:
Q  93 atagacacataaaataggtggtgggccatatcattaaataggtctgactatcattaata---ttcaagaatttttgtgtctatatctctccaaatggtag 189  Q
    ||||||||| ||||||||||||||| | ||||||||||||  ||| |  |||||||||    || |||| |||||||||||||||||| |||||||  ||    
T  2582370 atagacaca-aaaataggtggtgggtcctatcattaaataaatctcatcatcattaattatttttaagattttttgtgtctatatctccccaaatgaaag 2582468  T
Q  190 aaatggagaa 199  Q
    ||||||||||    
T  2582469 aaatggagaa 2582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 29340982 - 29340913
Alignment:
Q  158 aatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    ||||||||| ||||||||||||||||||   |||||||||| ||   ||||||||||| |||||||||||    
T  29340982 aatttttgtctctatatctctccaaatgaatgaaatggagagaataataaatggagaagatcttaactcg 29340913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 10242812 - 10242777
Alignment:
Q  163 ttgtgtctatatctctccaaatggtagaaatggaga 198  Q
    |||||||| |||||||||||||||||||||||||||    
T  10242812 ttgtgtctttatctctccaaatggtagaaatggaga 10242777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 32129713 - 32129763
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||||||||||||| | ||||||||||||| || ||||||||||    
T  32129713 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggaga 32129763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 11775783 - 11775711
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    ||||||| ||| ||||| | ||||||||||||| | ||||||||||||| |  ||||||||||  ||||||||    
T  11775783 ttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaac 11775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 39902403 - 39902335
Alignment:
Q  155 aagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaa 223  Q
    |||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||  |||||||    
T  39902403 aagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaa 39902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 20485828 - 20485687
Alignment:
Q  87 agagatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcattaata---ttcaagaatttttgtgtctatatctctccaaa 183  Q
    ||||||||| ||||||||||| ||||||||| | | ||||||||||||| | ||||||||||||    ||| |||| |||||||||||||||||||||||    
T  20485828 agagatataaacacataaaatgggtggtgggtcgtgtcattaaataggtttcactatcattaattattttctagaacttttgtgtctatatctctccaaa 20485729  T
Q  184 tggtagaaatggagaaaaatttaaatggagaatatcttaact 225  Q
    ||||| |||||||| ||||||||||||||||  |||||||||    
T  20485728 tggtaaaaatggaggaaaatttaaatggagaggatcttaact 20485687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 54911855 - 54911780
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  54911855 ttcaagaatttttgtgtttatatatcttcaaatggtagaaatggacaaaaattaaaatggagagaatcttaactcg 54911780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 20485814 - 20485864
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20485814 tgtgtttatatctctccaaatggtagaaatggagaaaaatttaaatggaga 20485864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 28229410 - 28229545
Alignment:
Q  89 agatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcattaatattcaagaatttttgtgtctatatctctccaaatggta 188  Q
    ||||||||||||| ||||||||||||| | | |||||||||||  |||| || ||||||||| ||      |||||||||||||||||||| |||||| |    
T  28229410 agatatagacacaaaaaataggtggtgagtcctatcattaaatgagtctcaccatcattaatttttttt--tttttgtgtctatatctctctaaatggaa 28229507  T
Q  189 gaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    |||||||| || |  |||||||||||  ||||||||||    
T  28229508 gaaatggacaagagattaaatggagaggatcttaactc 28229545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 48084798 - 48084763
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  48084798 tgtgtctatatctctccaaatggtagaaatggagaa 48084763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 32577516 - 32577463
Alignment:
Q  159 atttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatgga 212  Q
    |||||||||||| ||||||||||||| | |||||||||||| | ||||||||||    
T  32577516 atttttgtgtctttatctctccaaatagaagaaatggagaagagtttaaatgga 32577463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 33338186 - 33338306
Alignment:
Q  96 gacacataaaataggtggtgggccatatcattaaataggtctgactatcatta---atattcaagaatttttgtgtctatatctctccaaatggtagaaa 192  Q
    |||||| |||||||| |||||| | |||||||||||  |||| |  |||||||   || |||||| |||||||||||| ||||||| |||| || |||||    
T  33338186 gacacacaaaataggaggtgggtcctatcattaaatgagtctcatcatcattaactattttcaag-atttttgtgtctttatctcttcaaacggaagaaa 33338284  T
Q  193 tggagaaaaatttaaatggaga 214  Q
    |||| || | ||||||||||||    
T  33338285 tggaaaagagtttaaatggaga 33338306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 48950677 - 48950536
Alignment:
Q  89 agatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcatta---atattcaagaatttttgtgtctatatctctccaaatg 185  Q
    ||||| ||||||||||||||||||||||  | |||||||||||  |||| || |||||||   || ||||||| ||||||| | | ||||| |  |||||    
T  48950677 agataaagacacataaaataggtggtggatcctatcattaaatgagtctcaccatcattaattattttcaagattttttgtatttttatctttgtaaatg 48950578  T
Q  186 gtagaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    |  ||||| ||||| | ||||||||||||  |||| ||||||    
T  48950577 gatgaaatagagaagagtttaaatggagaggatctcaactcg 48950536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 550920 - 550974
Alignment:
Q  172 tatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    ||||||||||||||| ||||||||||||| |  ||||||||||  ||||||||||    
T  550920 tatctctccaaatggaagaaatggagaaagacataaatggagaggatcttaactc 550974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 778906 - 778976
Alignment:
Q  155 aagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaact 225  Q
    |||| ||||||| ||| ||||||| ||||||| |||||  ||||||| ||||||||||||  |||||||||    
T  778906 aagattttttgtttctttatctctacaaatggaagaaagagagaaaagtttaaatggagaggatcttaact 778976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 34373669 - 34373731
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||||||| ||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  34373669 ttcaagattttttgtctctttatctctccaaattgaagaaatggagaaacacataaatggaga 34373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 40851764 - 40851702
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  40851764 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggaga 40851702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 19897312 - 19897279
Alignment:
Q  15 tgcattaaaaagtgaaaataacatttattttaaa 48  Q
    |||||| |||||||||||||||||||||||||||    
T  19897312 tgcattgaaaagtgaaaataacatttattttaaa 19897279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 43720034 - 43720103
Alignment:
Q  155 aagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    |||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||| ||| ||||    
T  43720034 aagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagatcctaac 43720103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 27033642 - 27033594
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaa 200  Q
    ||||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  27033642 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 27033594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 38397066 - 38396999
Alignment:
Q  160 tttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactcg 227  Q
    ||||| ||||||||||||||||||| |  |||||||||| |||  |||||||||||||||||||||||    
T  38397066 tttttttgtctatatctctccaaattgatgaaatggagagaaaaataaatggagaatatcttaactcg 38396999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 41072957 - 41073070
Alignment:
Q  89 agatatagacacataaaataggtggtgggccatatcattaaataggtctgactatcatta---atattcaagaatttttgtgtctatatctctccaaatg 185  Q
    ||||||||||| ||||||||| ||||||| | ||||||||||| | ||| || |||||||   || || |||| ||||||||||| |||||||| |||||    
T  41072957 agatatagacatataaaatagttggtgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatg 41073056  T
Q  186 gtagaaatggagaa 199  Q
      ||||||||||||    
T  41073057 aaagaaatggagaa 41073070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 30824166 - 30824095
Alignment:
Q  155 aagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    |||| |||||||||||||||||||| |||||| |||||||||||| |  ||||||||| |  ||||||||||    
T  30824166 aagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggaaaggatcttaactc 30824095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 5876170 - 5876222
Alignment:
Q  19 ttaaaaagtgaaaataacatttattttaaagcaaatattttttgctaaaacga 71  Q
    ||||||||||||||  ||||||||||||||  ||||| |||||| ||||||||    
T  5876170 ttaaaaagtgaaaacgacatttattttaaaataaataatttttgttaaaacga 5876222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 26428634 - 26428587
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  26428634 ttcaaaaatttgtgtgtctatatctctccaaattgtagaaatggagaa 26428587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 38865271 - 38865206
Alignment:
Q  161 ttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaactc 226  Q
    |||||||||||||||||||||||||  | |||||||||| |  |||||||||||  ||||||||||    
T  38865271 ttttgtgtctatatctctccaaatgaaataaatggagaagagattaaatggagatgatcttaactc 38865206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 23610633 - 23610561
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    ||||||| ||| ||| ||| ||||||||||||| | ||||||||||||| || ||||||||||  ||||||||    
T  23610633 ttcaagattttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 23610561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 31862316 - 31862351
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    |||||||||||||||||||||||||||||| |||||    
T  31862316 tgtgtctatatctctccaaatggtagaaatagagaa 31862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 5763258 - 5763308
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||||||||||||| | ||||||||||||| || ||||||||||    
T  5763258 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggaga 5763308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 12153162 - 12153100
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  12153162 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 12153100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 46804619 - 46804585
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggaga 198  Q
    ||||||| |||||||||||||||||||||||||||    
T  46804619 tgtgtctttatctctccaaatggtagaaatggaga 46804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 3952254 - 3952302
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaa 200  Q
    ||||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  3952254 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 3952302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 12241492 - 12241540
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaa 200  Q
    ||||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  12241492 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 12241540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 56564707 - 56564675
Alignment:
Q  166 tgtctatatctctccaaatggtagaaatggaga 198  Q
    ||||| |||||||||||||||||||||||||||    
T  56564707 tgtctttatctctccaaatggtagaaatggaga 56564675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 227660 - 227695
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||||||||||||||||||| ||||||||||||||    
T  227660 tgtgtctatatctctccaaattgtagaaatggagaa 227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 4804427 - 4804377
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||||||||||||| | ||||||||||||| || ||||||||||    
T  4804427 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggaga 4804377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 28696732 - 28696770
Alignment:
Q  160 tttttgtgtctatatctctccaaatggtagaaatggaga 198  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  28696732 tttttgtgtctttatctctccaaatgatagaaatggaga 28696770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 31708289 - 31708327
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaa 202  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  31708289 tgtgtctatatctcttcaaatgatagaaatggagaaaaa 31708327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 32737853 - 32737803
Alignment:
Q  164 tgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||||||||||||| | ||||||||||||| || ||||||||||    
T  32737853 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggaga 32737803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 13888611 - 13888644
Alignment:
Q  166 tgtctatatctctccaaatggtagaaatggagaa 199  Q
    ||||||||||||||||||||||||||||| ||||    
T  13888611 tgtctatatctctccaaatggtagaaatgaagaa 13888644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 1249230 - 1249302
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    ||||||| ||| ||||||| ||||| ||||||| | ||||||||||||| |  ||||||||||  ||||||||    
T  1249230 ttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaac 1249302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 7162075 - 7162027
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaa 200  Q
    ||||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  7162075 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 7162027  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 7841794 - 7841856
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||| ||| || ||||||||||    
T  7841794 ttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaatggaga 7841856  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 12380994 - 12381056
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  12380994 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 12381056  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 12385061 - 12385123
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  12385061 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 12385123  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 14969719 - 14969677
Alignment:
Q  29 aaaataacatttattttaaagcaaatattttttgctaaaacga 71  Q
    ||||| ||||||||||||||  |||||||||||||||||||||    
T  14969719 aaaatgacatttattttaaaataaatattttttgctaaaacga 14969677  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 18976395 - 18976433
Alignment:
Q  161 ttttgtgtctatatctctccaaatggtagaaatggagaa 199  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  18976395 ttttgtgtttatatctctccaaatggtagaaatgaagaa 18976433  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 45978013 - 45977951
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||| | ||||||||||||| |  ||||||||||    
T  45978013 ttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 45977951  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 50294147 - 50294209
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||| ||| ||||||| ||||||||||||||| |||||| |||||| |  ||||||||||    
T  50294147 ttcaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaatggaga 50294209  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 1228622 - 1228674
Alignment:
Q  162 tttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggaga 214  Q
    ||||||||||||||| | |||| ||||||||||||||| ||  ||||||||||    
T  1228622 tttgtgtctatatctattcaaagggtagaaatggagaagaacgtaaatggaga 1228674  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 50484377 - 50484305
Alignment:
Q  152 ttcaagaatttttgtgtctatatctctccaaatggtagaaatggagaaaaatttaaatggagaatatcttaac 224  Q
    ||||||| ||| ||||||| |||||||||||||   ||||||||||||| |  ||||||||||  ||||||||    
T  50484377 ttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 50484305  T

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